RNA id: TU411298



Basic Information


Item Value
RNA id TU411298
length 1098
RNA type TUCP
GC content 0.42
exon number 5
gene id G299000
representative True

Chromosome Information


Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 462414 ~ 470620 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TCTAACTGCTCTAAATTCTGCTATTACATTGGCAATACTATCTGACAGGAATAAAACAAGCTATACAAGTgtcacattttaaattaagcaCATCTTAAATTAGCCAAATtagtcaaaaagtaaaaagaaaaaaagtactatttaatttttattatttgtaaataaattaatcatatTTACTATGCCTGACATTAGGTATAATAATATgttgtcctattctattggcaacacAATCCTTCAGGGATTAGAAAAGCTTTCACCAAAAAGTGcagtttattctttattcaaaaagagaaaatgacccaaaaatgtaaatatagagTTTTTGTGTGACATCAATAATATGATGTATTAATAACTTGTATCAAttattcatatttacattttaataaaaaaaaatagcagtgaTTTTGGATAAGATCAAAGCTCAGTCATAGCAGCAGATCTGAGGTTCTTCAGCATGATGATAgtggtagtgatgatgatgatgatgatgatggggatggggatgatgatgatagtGGTAGTAACAGCAGTAATCTGTGGCTGATTGGTTGAGGGCTGATGTAATCATGACGTCAGATCAGACGAATCCTGTGGCTTCAGTGGGCGGAGCCGCAGGATCCAGACCGCACTGCTTCATCTGAACGGCGATATCAAAAAGTAATCGTAGCATTCACACATGGTCTTGGCTTTCTCCCCAGACGTAGACTCCGTGTCTCCTGACGAGGACGGCGCAGGAGTCCGGGTACTCCTCCATAGCTCTCGCCATGTGCTCCTTCAGGTCCTTCTCCTCCGGGGTATTCTCAACGATGGGTACAACCAGAGACTCGTCATACctgAAATTAGTGCCGGAGTTTCCTCTCCGAATCCCTTTGATCATCTCCTGGTGGGTGATGCGGAACTCTTTGCCGGGGGTACAGCAGCGTGGCCATCACCGCGGCCTTCGAGTGACTGTGAATAACAGCCTGAGCTCCCCTCATGGTGTAGGCGTTCATGAAGAGCGGGGTGCACTGGCTCTTCTTCAGCTTCTTTGACGCAGGAGGAGCGCTGATGTCCTTCTCGTCTATATCACAGACGAACATGTCCTCCGGCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU411294 lncRNA upstream 22297 439913 ~ 440117 (+) True G298997
TU411166 lncRNA upstream 131298 296203 ~ 331116 (+) True G298903
TU411150 lncRNA upstream 249645 210958 ~ 212769 (+) True G298890
TU411136 lncRNA upstream 315721 145976 ~ 146693 (+) True G298880
TU411118 lncRNA upstream 327198 134716 ~ 135216 (+) False G298868
TU411305 lncRNA downstream 242 470862 ~ 473103 (+) True G299003
TU411309 lncRNA downstream 28595 499215 ~ 499615 (+) True G299006
TU411332 lncRNA downstream 163221 633841 ~ 651207 (+) True G299028
TU411381 lncRNA downstream 221559 692179 ~ 692735 (+) True G299049
TU411394 lncRNA downstream 265744 736364 ~ 737381 (+) True G299057
XM_022665230.1 mRNA upstream 201393 232806 ~ 261021 (+) True LOC103024613
XM_022665291.1 mRNA upstream 271926 167671 ~ 190488 (+) True ttc17
XM_022665231.1 mRNA upstream 296317 154965 ~ 166097 (+) True prc1
XM_022665293.1 mRNA upstream 308666 138255 ~ 153748 (+) True vps33b
XM_022665292.1 mRNA upstream 308666 138293 ~ 153748 (+) False vps33b
XM_022665247.1 mRNA downstream 13150 483770 ~ 499002 (+) True LOC111191160
XM_022665265.1 mRNA downstream 218637 689257 ~ 701417 (+) True LOC103040103
XM_022665233.1 mRNA downstream 394613 865233 ~ 950940 (+) True LOC103023516
XM_022665234.1 mRNA downstream 755972 1226592 ~ 1229189 (+) True LOC111191156
XM_022665235.1 mRNA downstream 867151 1337771 ~ 1340796 (+) True LOC111191157
TU411137 other upstream 305010 154984 ~ 157404 (+) False prc1
TU411109 other upstream 383734 78480 ~ 78680 (+) True G298859
TU411098 other upstream 395227 52791 ~ 67187 (+) False LOC111191161
TU411377 other downstream 234540 705160 ~ 706824 (+) True G299046
TU411607 other downstream 747189 1217809 ~ 1218106 (+) True G299226
TU411618 other downstream 853800 1324420 ~ 1324854 (+) True G299236
TU411691 other downstream 1092268 1562888 ~ 1566694 (+) False LOC103047296
TU411938 other downstream 1725559 2196179 ~ 2204255 (+) False G299477

Expression Profile


TU411298 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

TU411298 Expression in each Bioproject

Bar chart with 6 bars.
TU411298 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.