RNA id: TU411309


Basic Information

Item Value
RNA id TU411309
length 401
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G299006
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 499215 ~ 499615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttgggtgtaacgtgaaataataaaccaatcagagtgtctctttaagagctcatcattctctttaagagtagatcaggtgagctctgactttggtggattgctattgtaacggtgcagctacctggacgtgttcaacaaactcttctcagcagaggaaactgagctgctggttgacgctgtgaaggagctccagcagctcatttacgggaacagcaatgttattttatttactattctgtttattgttgatgtaaaagttgggtttgtgctgctgtgtgttcatgtgtgtgtaataagtgggggtgtacgctcggctcggcacggcgcctgtgttaccgagatagtgatgaacgtctgactgttggcgtctgtctaggttgtattcagtcagtggagctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411305 lncRNA upstream 26112 470862 ~ 473103 (+) True G299003
TU411294 lncRNA upstream 59098 439913 ~ 440117 (+) True G298997
TU411166 lncRNA upstream 168099 296203 ~ 331116 (+) True G298903
TU411150 lncRNA upstream 286446 210958 ~ 212769 (+) True G298890
TU411136 lncRNA upstream 352522 145976 ~ 146693 (+) True G298880
TU411332 lncRNA downstream 134226 633841 ~ 651207 (+) True G299028
TU411381 lncRNA downstream 192564 692179 ~ 692735 (+) True G299049
TU411394 lncRNA downstream 236749 736364 ~ 737381 (+) True G299057
TU411395 lncRNA downstream 236749 736364 ~ 737381 (+) False G299057
TU411412 lncRNA downstream 270505 770120 ~ 771703 (+) True G299071
XM_022665247.1 mRNA upstream 213 483770 ~ 499002 (+) True LOC111191160
XM_022665230.1 mRNA upstream 238194 232806 ~ 261021 (+) True LOC103024613
XM_022665291.1 mRNA upstream 308727 167671 ~ 190488 (+) True ttc17
XM_022665231.1 mRNA upstream 333118 154965 ~ 166097 (+) True prc1
XM_022665293.1 mRNA upstream 345467 138255 ~ 153748 (+) True vps33b
XM_022665265.1 mRNA downstream 189642 689257 ~ 701417 (+) True LOC103040103
XM_022665233.1 mRNA downstream 365618 865233 ~ 950940 (+) True LOC103023516
XM_022665234.1 mRNA downstream 726977 1226592 ~ 1229189 (+) True LOC111191156
XM_022665235.1 mRNA downstream 838156 1337771 ~ 1340796 (+) True LOC111191157
XM_022665236.1 mRNA downstream 884725 1384340 ~ 1413595 (+) True LOC103044962
TU411298 other upstream 28595 462414 ~ 470620 (+) True G299000
TU411137 other upstream 341811 154984 ~ 157404 (+) False prc1
TU411109 other upstream 420535 78480 ~ 78680 (+) True G298859
TU411098 other upstream 432028 52791 ~ 67187 (+) False LOC111191161
TU411377 other downstream 205545 705160 ~ 706824 (+) True G299046
TU411607 other downstream 718194 1217809 ~ 1218106 (+) True G299226
TU411618 other downstream 824805 1324420 ~ 1324854 (+) True G299236
TU411691 other downstream 1063273 1562888 ~ 1566694 (+) False LOC103047296
TU411938 other downstream 1696564 2196179 ~ 2204255 (+) False G299477

Expression Profile