RNA id: TU411381


Basic Information

Item Value
RNA id TU411381
length 282
lncRNA type intronic
GC content 0.51
exon number 2
gene id G299049
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 692179 ~ 692735 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGGCCAGTGTTTGGTTGGTGTTGGAGTAAGTCAGTGCATGCTGTAGGTGAAACTCGCTGGGCTGCAGTGAGCTGAGCTGGTCCGGTGTTTGGTCGATTTTTGGACAGTGTTCGGTCAGTGTTTGGCCAGTGTTTGGCCAGTGTTTGGTCAGTGTTTAGCCAGTGTTTGGTCAGTGTTTGGTTGGTGTTGGAGTAAGTCAGTGCATGCTGTAGGTGAAAGTCGCTGGGCTGCAGTGAGCTGAGTTGGTCAGTGTTTGGTCAGTGTTTGGTTGGTGTTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411332 lncRNA upstream 40972 633841 ~ 651207 (+) True G299028
TU411309 lncRNA upstream 192564 499215 ~ 499615 (+) True G299006
TU411305 lncRNA upstream 219076 470862 ~ 473103 (+) True G299003
TU411294 lncRNA upstream 252062 439913 ~ 440117 (+) True G298997
TU411166 lncRNA upstream 361063 296203 ~ 331116 (+) True G298903
TU411394 lncRNA downstream 43629 736364 ~ 737381 (+) True G299057
TU411395 lncRNA downstream 43629 736364 ~ 737381 (+) False G299057
TU411412 lncRNA downstream 77385 770120 ~ 771703 (+) True G299071
TU411413 lncRNA downstream 77564 770299 ~ 770603 (+) True G299072
TU411420 lncRNA downstream 101638 794373 ~ 795114 (+) True G299079
XM_022665247.1 mRNA upstream 193177 483770 ~ 499002 (+) True LOC111191160
XM_022665230.1 mRNA upstream 431158 232806 ~ 261021 (+) True LOC103024613
XM_022665291.1 mRNA upstream 501691 167671 ~ 190488 (+) True ttc17
XM_022665231.1 mRNA upstream 526082 154965 ~ 166097 (+) True prc1
XM_022665292.1 mRNA upstream 538431 138293 ~ 153748 (+) False vps33b
XM_022665233.1 mRNA downstream 172498 865233 ~ 950940 (+) True LOC103023516
XM_022665234.1 mRNA downstream 533857 1226592 ~ 1229189 (+) True LOC111191156
XM_022665235.1 mRNA downstream 645036 1337771 ~ 1340796 (+) True LOC111191157
XM_022665236.1 mRNA downstream 691605 1384340 ~ 1413595 (+) True LOC103044962
XM_022665216.1 mRNA downstream 726301 1419036 ~ 1429239 (+) True LOC103021976
TU411298 other upstream 221559 462414 ~ 470620 (+) True G299000
TU411137 other upstream 534775 154984 ~ 157404 (+) False prc1
TU411109 other upstream 613499 78480 ~ 78680 (+) True G298859
TU411098 other upstream 624992 52791 ~ 67187 (+) False LOC111191161
TU411377 other downstream 12425 705160 ~ 706824 (+) True G299046
TU411607 other downstream 525074 1217809 ~ 1218106 (+) True G299226
TU411618 other downstream 631685 1324420 ~ 1324854 (+) True G299236
TU411691 other downstream 870153 1562888 ~ 1566694 (+) False LOC103047296
TU411938 other downstream 1503444 2196179 ~ 2204255 (+) False G299477

Expression Profile