RNA id: TU411395


Basic Information

Item Value
RNA id TU411395
length 952
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G299057
representative False

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 736364 ~ 737381 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acattacaatacaataataaacactCAGACActctgagaaacactgaGATACACTGAGATACACTCTGTGATACACTGAGATACACTCTTTGATACACTCTGAGATACACTAAGACACACTGAGATACACTCTGAGATACACTCTGAGATACACTAAGACACACTGAGATACATTCTGAGATACACTGAGATACATTATGATACACCGAGACACACTTAGATACATTAAGATACAatgagaaacactgagataCACGGAGACACATTAAGATACAATGAGAAACACTGGGGTACAGTAAGATACGTTAGAATACTCTGAGATACAATGAGACAAATTAAGACAAACTCAGATACATTAAGATACACTGATTCAAACTTATATACATTAAGATACACTGAGATACTCTGAGATACAATAAGATGCACTGATTCAAACTGAGATACATTAAGACTCACTGAGACAAAGTGAGACAcactgagacagagtgagacacGCTGTATCCGCTCTGTTCTGAGGGAAATGAAGTTGTGTCTCTGACTGAGAGCTGTCACTGTGGTTCTAAGCTCGAGCTCACTGCGCGCTGTTACGCACCGCCGGAGCGCCTTTACGCAGCCGGAGCGCGCGGGGCTGGGTATTGTGTCAGTGTGATACAGGAGCTGCTGAGGGTCCGAGGCTGGActgggtggatggatagattggtgtatggatggatggagggatggcgTGGTGCAGGACAGGCTGCACTGGCTGATACGAGCTCCTGCTTCAGTATTTAGTGCGCAGAACAGCTCCAACTAGTGACTGCGTGGgtctctggagtgtgtgtgtgtgtggtgctgaaaTGTAGTGCAGGCTTCTGAGGTTTTAGGAGCTTTTCAGTATTtggggaaatatatatatgtttgtgtgtgtgtgtgtgtgtgcagatgtgGTTGGaactccaaataaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411381 lncRNA upstream 43629 692179 ~ 692735 (+) True G299049
TU411332 lncRNA upstream 85157 633841 ~ 651207 (+) True G299028
TU411309 lncRNA upstream 236749 499215 ~ 499615 (+) True G299006
TU411305 lncRNA upstream 263261 470862 ~ 473103 (+) True G299003
TU411294 lncRNA upstream 296247 439913 ~ 440117 (+) True G298997
TU411412 lncRNA downstream 32739 770120 ~ 771703 (+) True G299071
TU411413 lncRNA downstream 32918 770299 ~ 770603 (+) True G299072
TU411420 lncRNA downstream 56992 794373 ~ 795114 (+) True G299079
TU411543 lncRNA downstream 113304 850685 ~ 851083 (+) True G299169
TU411558 lncRNA downstream 124872 862253 ~ 862518 (+) True G299181
XM_022665265.1 mRNA upstream 34947 689257 ~ 701417 (+) True LOC103040103
XM_022665247.1 mRNA upstream 237362 483770 ~ 499002 (+) True LOC111191160
XM_022665230.1 mRNA upstream 475343 232806 ~ 261021 (+) True LOC103024613
XM_022665291.1 mRNA upstream 545876 167671 ~ 190488 (+) True ttc17
XM_022665231.1 mRNA upstream 570267 154965 ~ 166097 (+) True prc1
XM_022665233.1 mRNA downstream 127852 865233 ~ 950940 (+) True LOC103023516
XM_022665234.1 mRNA downstream 489211 1226592 ~ 1229189 (+) True LOC111191156
XM_022665235.1 mRNA downstream 600390 1337771 ~ 1340796 (+) True LOC111191157
XM_022665236.1 mRNA downstream 646959 1384340 ~ 1413595 (+) True LOC103044962
XM_022665216.1 mRNA downstream 681655 1419036 ~ 1429239 (+) True LOC103021976
TU411377 other upstream 29540 705160 ~ 706824 (+) True G299046
TU411298 other upstream 265744 462414 ~ 470620 (+) True G299000
TU411137 other upstream 578960 154984 ~ 157404 (+) False prc1
TU411109 other upstream 657684 78480 ~ 78680 (+) True G298859
TU411099 other upstream 669177 52791 ~ 67187 (+) False LOC111191161
TU411607 other downstream 480428 1217809 ~ 1218106 (+) True G299226
TU411618 other downstream 587039 1324420 ~ 1324854 (+) True G299236
TU411691 other downstream 825507 1562888 ~ 1566694 (+) False LOC103047296
TU411938 other downstream 1458798 2196179 ~ 2204255 (+) False G299477
TU411947 other downstream 1458798 2196179 ~ 2204255 (+) False G299477

Expression Profile