RNA id: TU411609


Basic Information

Item Value
RNA id TU411609
length 556
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G299228
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1242921 ~ 1243476 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaaaaactgaaacacctggttttagagcacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttacgttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggttcttcttggtggtatgctgacgttaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgcttcaGCAAGACGTGctccaacaatttgtcctcttttgaactctggtatgtcccccataatgttgtgtgcattgtaatatttagagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggtgcaatgtgcaattaatgaagattgaacaccaggctgctccaatttagacatgaaacctaaaatcccacactaaaatgatgacaggtgtttcagtttcattctccaacccctgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411608 lncRNA upstream 24016 1218474 ~ 1218905 (+) True G299227
TU411606 lncRNA upstream 30878 1211814 ~ 1212043 (+) True G299225
TU411595 lncRNA upstream 53766 1135303 ~ 1189155 (+) True G299214
TU411585 lncRNA upstream 181246 1052123 ~ 1061675 (+) True G299205
TU411576 lncRNA upstream 198765 996768 ~ 1044156 (+) True G299199
TU411610 lncRNA downstream 51307 1294783 ~ 1295072 (+) True G299229
TU411613 lncRNA downstream 64138 1307614 ~ 1307851 (+) True G299232
TU411625 lncRNA downstream 102028 1345504 ~ 1362007 (+) True G299242
TU411627 lncRNA downstream 102028 1345504 ~ 1368309 (+) False G299242
TU411628 lncRNA downstream 102028 1345504 ~ 1399995 (+) False G299242
XM_022665234.1 mRNA upstream 13732 1226592 ~ 1229189 (+) True LOC111191156
XM_022665233.1 mRNA upstream 291981 865233 ~ 950940 (+) True LOC103023516
XM_022665265.1 mRNA upstream 541504 689257 ~ 701417 (+) True LOC103040103
XM_022665247.1 mRNA upstream 743919 483770 ~ 499002 (+) True LOC111191160
XM_022665230.1 mRNA upstream 981900 232806 ~ 261021 (+) True LOC103024613
XM_022665235.1 mRNA downstream 94295 1337771 ~ 1340796 (+) True LOC111191157
XM_022665236.1 mRNA downstream 140864 1384340 ~ 1413595 (+) True LOC103044962
XM_022665216.1 mRNA downstream 175560 1419036 ~ 1429239 (+) True LOC103021976
XM_022665217.1 mRNA downstream 175560 1419036 ~ 1429239 (+) False LOC103021976
XM_022665239.1 mRNA downstream 249102 1492578 ~ 1502980 (+) True traf6
TU411607 other upstream 24815 1217809 ~ 1218106 (+) True G299226
TU411377 other upstream 536097 705160 ~ 706824 (+) True G299046
TU411298 other upstream 772301 462414 ~ 470620 (+) True G299000
TU411137 other upstream 1085517 154984 ~ 157404 (+) False prc1
TU411109 other upstream 1164241 78480 ~ 78680 (+) True G298859
TU411618 other downstream 80944 1324420 ~ 1324854 (+) True G299236
TU411691 other downstream 319412 1562888 ~ 1566694 (+) False LOC103047296
TU411938 other downstream 952703 2196179 ~ 2204255 (+) False G299477
TU411947 other downstream 952703 2196179 ~ 2204255 (+) False G299477
TU412046 other downstream 1366903 2610379 ~ 2636008 (+) False LOC103025330

Expression Profile