RNA id: TU411629


Basic Information

Item Value
RNA id TU411629
length 2113
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G299243
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1346665 ~ 1348801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatcttTAGCATATAGTGCacaaaaaagcaaagcaaataTACAGAAAACGGTCAGATTTAAACAAGATTTACCACAATGAACCTGGAATGGCTAGTTTTGGtagggtagtgcacctcttggtgagagatcggtGACTTTTAAATGCACTCAAATACATTCTTTCCAACTGAGAGACTACAAAAGTGGTGTATTAATGAACCGAGAGAAGCAATATGgttgttttgaaaaatatattatatatatttactgtattatatttagCACATCCTGTAATAGTGCACAACAGCAGTAGCAAagcaaaatgaccaaaaaaacactagatttaaacaaaatttaccACAATGAACCTGGAATGGCTAGTTTTGGtagggtagtgcacctcttggtgagagactggTAACTTTTAAATGCACTTAAATACATTCTGCCCAGTTAACAATAAAATCATACACTCCCTGTTTGAGAATGTCTAagctattataatatttaatatatttaatatattttcagcacagtattttttcagtaaacACCACATCACTCTCCACACAGACTGATATAATAAGTCCTGTAATATTgtgcacaacagcagcagcagagcaaaGCTTCCAAAAAAGCCCTAATTCTTCTCAAATCACTTTATCAGCACTTGGAAACACTTTAAACAAGATTTACCACAGCAGCGTCATCCACCACATTAATACTACAGGTCTGGAGAGAtcagctaaagctaaataaacGCTAAAGCTAAATAAACGGTGGTCAGAAGGTGATTCCCCACTGAAACGCTGAACGCAGGAAATGTCAGCAGACGGAAAAGGTGTGGTTCTGATTATATACGCAGTATCTAGTGTTTAAAGCTAAAAGAATTTATATAATTAAGTACTAAGATACTGAGAAAGAGATGTGATGTAATGCTGTGATGATGTGATGCTTTGATTGATTGGTTCCTTTCGTTTTTATTGGCCAAACGTTTGGTccgtatatatttttcagtctTCAGCAGATCAGTTAAGACCCTCTTTAAAGCAACGGCACTTAAAACAACCCTGTATTTGAGcttaaatacatatattcacACTCATATTCACACTATGGCTgcaaaatatttgaaatatagaTCAGATATAGCAATTAaattaccaggaacaataaacaTGATTGAGAATTTAGACTGAAATGTGCACACTCTGGTGCACTGTGTATTGTAAAATTGCGTTTTCAGCTCGtttcgcactatataTAAGGCGaacttataatccggtgctccttatgtatgaattctaccagtcagataagtattaaggagcagtaaagtcactctgctgaagtacagagttataagggtgttataagagttttcagtaaagtttctccagcactaaggctggagcattagcagcattagccggtAAACCacagcgctaagcactagctctttccccTTTCAGAGGggagtttaaaacaaaaaacaacctaAGTGAGAGTGGAACATTCAGGTGTCTCAGTTTAGCGCTGTTGGGCGGCGTTtactagcggctaatgctaatgctgctgcacccagccttagtgctggagaaacttcgctgaaaactcacccttatacaaatgctgaaaatgtAAGGTTACTGTTTagaagataaatctgtgtagattaacatccagcattttttgtttaagaattacagttctgtttacgTAGGTGGTTCCGCCAGCTTTCCTAGGCAtctttactagtgtcgcttaataatgcgccttataataatgtttgttttgactgaacaaataaatatatatagtgaaaatgtctttaaatatcatgattttaaacatttttacagtatCTCCCGGTTCTACATGTGCACACAATGCTGAAACTATACACTATGCAGCCCtcatactcacactcacactcaaagCCTCTCAACACCCATATCAATCTCGCTCCAGCAAcagacaataaaagaaaagaaagagaaaagagaagaaaagagaagagaaatgagCTGCAGAAGGTAAAGCAGGGCGTTCGTCTCACTTCAGAGCTTTGGGATCCAGCTGAAACAGGGCCAGCATGTCCAGCATCGCCTGTCTGATGTGGTTCCCAAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411613 lncRNA upstream 38814 1307614 ~ 1307851 (+) True G299232
TU411610 lncRNA upstream 51593 1294783 ~ 1295072 (+) True G299229
TU411609 lncRNA upstream 103189 1242921 ~ 1243476 (+) True G299228
TU411608 lncRNA upstream 127760 1218474 ~ 1218905 (+) True G299227
TU411606 lncRNA upstream 134622 1211814 ~ 1212043 (+) True G299225
TU411638 lncRNA downstream 16638 1365439 ~ 1367927 (+) True G299251
TU411654 lncRNA downstream 52630 1401431 ~ 1402318 (+) False G299265
TU411661 lncRNA downstream 52630 1401431 ~ 1408618 (+) True G299265
TU411662 lncRNA downstream 53169 1401970 ~ 1408618 (+) False G299265
TU411667 lncRNA downstream 53169 1401970 ~ 1402318 (+) False G299265
XM_022665235.1 mRNA upstream 5869 1337771 ~ 1340796 (+) True LOC111191157
XM_022665234.1 mRNA upstream 117476 1226592 ~ 1229189 (+) True LOC111191156
XM_022665233.1 mRNA upstream 395725 865233 ~ 950940 (+) True LOC103023516
XM_022665265.1 mRNA upstream 645248 689257 ~ 701417 (+) True LOC103040103
XM_022665247.1 mRNA upstream 847663 483770 ~ 499002 (+) True LOC111191160
XM_022665236.1 mRNA downstream 35539 1384340 ~ 1413595 (+) True LOC103044962
XM_022665216.1 mRNA downstream 70235 1419036 ~ 1429239 (+) True LOC103021976
XM_022665217.1 mRNA downstream 70235 1419036 ~ 1429239 (+) False LOC103021976
XM_022665239.1 mRNA downstream 143777 1492578 ~ 1502980 (+) True traf6
XM_022665256.1 mRNA downstream 209693 1558494 ~ 1562029 (+) True LOC111188231
TU411618 other upstream 21811 1324420 ~ 1324854 (+) True G299236
TU411607 other upstream 128559 1217809 ~ 1218106 (+) True G299226
TU411377 other upstream 639841 705160 ~ 706824 (+) True G299046
TU411298 other upstream 876045 462414 ~ 470620 (+) True G299000
TU411137 other upstream 1189261 154984 ~ 157404 (+) False prc1
TU411691 other downstream 214087 1562888 ~ 1566694 (+) False LOC103047296
TU411938 other downstream 847378 2196179 ~ 2204255 (+) False G299477
TU411947 other downstream 847378 2196179 ~ 2204255 (+) False G299477
TU412046 other downstream 1261578 2610379 ~ 2636008 (+) False LOC103025330
TU412522 other downstream 3819825 5168626 ~ 5170108 (+) False G299903

Expression Profile