RNA id: XM_022665255.1



Basic Information


Item Value
RNA id XM_022665255.1
length 1615
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC103047296
representative True

Chromosome Information


Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1562838 ~ 1567078 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CTATTGGCTCCTGGGTTGGAGTAGCGTTCTGCGATTTGATTGGTTGCTTACCGGAGCTCTAAATGTATCGAGCTGCGGTGGTTATAAGGTGGATTGAGggctgtttatttggattttatcAGATACAGaattGAGTGGTCTCCTGTTCCAACTTTCTCCTGCTCATGTTGCTGACTTTTCCACCTggtttaattgaattgaatttaccTTCATGAATACACACGATCAGAAGCTGCTGAACGAGGGGAAGAACATGGCATCTACAGAATTCTCCAGTAATCAGCGATCATCCTCTCCTTCACCATGTGGACAAATGCAGAAAAGTCTAGACGAAAAGACAACTcaccactgttcagactgtgggaagaatttTTCTTCAGGGAGTtatctcaaaacacacaaactcattcacactggagagaaaccgtttccCTGTCCAGAGTGTGAGAAGAGTTTTAATCGCCAGACTTCACTTCAGCAACAtctgcgcattcacacaggagagaaaccgtattactgcttaGACTGTGGAAAGACTTTTACTCTACAGAGTAGTCTACAGCTACACCggcgcgttcacactggagagaaaccgtatcaatgTCCAGACTGTGGACAGAATTTTACTACAAGGACAAATCTCAAAagacaccagcgcgttcacactgcagacaaaccGTACCAGTGCCCAGATTGTGGGCAAAGTTTTAAACTTCAGGGTACGCTCCAGCAACATcggcgcattcacactggagagaaaccatatcactgcttaTTCTGCGAGAGAAGTTTTATTCATCTGCGTACGCTCCAAGATCACCAGCGAGTTCACACTGGGGAAAAACCTTATCAGTGTccggactgtgggaagagttttaaacGTCTGGGTACTCTCCAACAACATCggcgcgttcacactggagagaaaccgtttcattgccAAGACTGTGGTCagaattttactcgtcaggctACACTCCAAGAACACCGgcgcattcacaccggagaaaaaccatatcactgctcagactgcggagaaagttttattaaaatgtcaaatctcaaaatacaccagcaggttcacaccggagagaaaccgtatcattGTTCAGATTGCGGGAGGAGTTTTAATCATCAGAGTACGCTCCAggaacaccagcgcattcacactggagaaaaaccgtatcactgcacaGAGTGTGgcaagagttttactcaacatagtaatctccaacaacaccagcgcattcacactggagagaaaccatatcactgtccagaatgtgggaagagttttaatcgctTGGCTAACTTCAGCcaacatcagcgcattcacactggagagaaaccgtattgcTGCTCAGAATGTGGAAGGAACTTCAGGCACTTAAAGACACTAAAGAGTCACAAGTGTGTCACGAACAGTCTGGAATTGGGAAGCGAGCCTCAAAAACAAGTTTctgaaacatatttataaaaacatgTGAATTTTATTGTAAAGAAAAAGTCTTTCTTATTCAGATTCTAAAGTAAAGTGAAGtgaatcaaatcagattttttttgctcaatgtggctcagatctgattttttcatggctgtgtgaacgtgccaaatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_002649354.1 lncRNA upstream 53449 1506920 ~ 1509389 (+) True LOC111191159
TU411702 lncRNA upstream 54807 1489671 ~ 1508031 (+) False LOC111191159
TU411670 lncRNA upstream 146220 1409986 ~ 1416618 (+) True G299266
TU411671 lncRNA upstream 146220 1409986 ~ 1416618 (+) False G299266
TU411665 lncRNA upstream 154220 1406538 ~ 1408618 (+) False G299265
TU411891 lncRNA downstream 153844 1720922 ~ 1722099 (+) True G299437
TU411892 lncRNA downstream 155156 1722234 ~ 1723281 (+) True G299438
TU411912 lncRNA downstream 264960 1832038 ~ 1832901 (+) True G299458
TU411927 lncRNA downstream 279161 1846239 ~ 1846495 (+) True G299472
TU411930 lncRNA downstream 287507 1854585 ~ 1854786 (+) True G299475
XM_022665256.1 mRNA upstream 809 1558494 ~ 1562029 (+) True LOC111188231
XM_022665239.1 mRNA upstream 59858 1492578 ~ 1502980 (+) True traf6
XM_022665216.1 mRNA upstream 133599 1419036 ~ 1429239 (+) True LOC103021976
XM_022665217.1 mRNA upstream 133599 1419036 ~ 1429239 (+) False LOC103021976
XM_022665236.1 mRNA upstream 149243 1384340 ~ 1413595 (+) True LOC103044962
XM_007231730.3 mRNA downstream 12032 1579110 ~ 1580936 (+) True LOC103044644
XM_022665286.1 mRNA downstream 831639 2398717 ~ 2927862 (+) True LOC103025330
XM_007246944.3 mRNA downstream 2090781 3657859 ~ 3745126 (+) True tshz3
XM_022665249.1 mRNA downstream 3295118 4862196 ~ 4894687 (+) True LOC103030650
XM_022665204.1 mRNA downstream 3335556 4902634 ~ 5024425 (+) False madd
TU411618 other upstream 237984 1324420 ~ 1324854 (+) True G299236
TU411607 other upstream 344732 1217809 ~ 1218106 (+) True G299226
TU411377 other upstream 856014 705160 ~ 706824 (+) True G299046
TU411298 other upstream 1092218 462414 ~ 470620 (+) True G299000
TU411137 other upstream 1405434 154984 ~ 157404 (+) False prc1
TU411938 other downstream 629101 2196179 ~ 2204255 (+) False G299477
TU411947 other downstream 629101 2196179 ~ 2204255 (+) False G299477
TU412046 other downstream 1043301 2610379 ~ 2636008 (+) False LOC103025330
TU412522 other downstream 3601548 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 3601548 5168626 ~ 5170108 (+) True G299903

Expression Profile