RNA id: TU411698


Basic Information

Item Value
RNA id TU411698
length 368
lncRNA type read_through
GC content 0.36
exon number 2
gene id G299283
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1467881 ~ 1567890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttggtggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaagaaactcatcatttttaagtgctatatattatactatattaggaggaaccaagactcagtcagaggtaCCCATCCCCCTTGGGTTGACCTGCTGAGGACAgtcaaataacagaacaaaaacaacagtactgagagataatgtggagctatatataatgtaaaaggTTATGAATTATGAGTATGTGATGGGTACATGCTCAGTGTTAATGTAAAGGAGATAATGCAGAGATATAGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411670 lncRNA upstream 51263 1409986 ~ 1416618 (+) True G299266
TU411671 lncRNA upstream 51263 1409986 ~ 1416618 (+) False G299266
TU411661 lncRNA upstream 59263 1401431 ~ 1408618 (+) True G299265
TU411891 lncRNA downstream 153032 1720922 ~ 1722099 (+) True G299437
TU411892 lncRNA downstream 154344 1722234 ~ 1723281 (+) True G299438
TU411912 lncRNA downstream 264148 1832038 ~ 1832901 (+) True G299458
TU411927 lncRNA downstream 278349 1846239 ~ 1846495 (+) True G299472
TU411930 lncRNA downstream 286695 1854585 ~ 1854786 (+) True G299475
XM_022665216.1 mRNA upstream 38642 1419036 ~ 1429239 (+) True LOC103021976
XM_022665217.1 mRNA upstream 38642 1419036 ~ 1429239 (+) False LOC103021976
XM_022665236.1 mRNA upstream 54286 1384340 ~ 1413595 (+) True LOC103044962
XM_022665235.1 mRNA upstream 127085 1337771 ~ 1340796 (+) True LOC111191157
XM_022665234.1 mRNA upstream 238692 1226592 ~ 1229189 (+) True LOC111191156
XM_007231730.3 mRNA downstream 11220 1579110 ~ 1580936 (+) True LOC103044644
XM_022665286.1 mRNA downstream 830827 2398717 ~ 2927862 (+) True LOC103025330
XM_007246944.3 mRNA downstream 2089969 3657859 ~ 3745126 (+) True tshz3
XM_022665249.1 mRNA downstream 3294306 4862196 ~ 4894687 (+) True LOC103030650
XM_022665204.1 mRNA downstream 3334744 4902634 ~ 5024425 (+) False madd
TU411618 other upstream 143027 1324420 ~ 1324854 (+) True G299236
TU411607 other upstream 249775 1217809 ~ 1218106 (+) True G299226
TU411377 other upstream 761057 705160 ~ 706824 (+) True G299046
TU411298 other upstream 997261 462414 ~ 470620 (+) True G299000
TU411137 other upstream 1310477 154984 ~ 157404 (+) False prc1
TU411938 other downstream 628289 2196179 ~ 2204255 (+) False G299477
TU411947 other downstream 628289 2196179 ~ 2204255 (+) False G299477
TU412046 other downstream 1042489 2610379 ~ 2636008 (+) False LOC103025330
TU412522 other downstream 3600736 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 3600736 5168626 ~ 5170108 (+) True G299903

Expression Profile