RNA id: TU411912


Basic Information

Item Value
RNA id TU411912
length 362
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G299458
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1832038 ~ 1832901 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGACTGTCCCATTCGGAAGGTAGCATGTGCTGCCTACCTGGGCAGCTGCCTTATTTTACCCCAATTCTGAAGGCAGCGTGAGATGTATCCTTCACGGCGAaggcaatcccatgatgcatttcaccagctcagagttccagcgctcagatttaaaaacatggcgGACGGAGCCGGCACTGCGAGGGAgtttctgtacaaatggATGAACGTGGGCCGGGGAAGGTGAACTCTggtcagaccggctggaggcagcgttagctccctttatgaatatatatattttttctttgaatgtaataaagttttctctcttaacattattatttttgcttgctgtgttttatagtcactatgcttattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411892 lncRNA upstream 108757 1722234 ~ 1723281 (+) True G299438
TU411891 lncRNA upstream 109939 1720922 ~ 1722099 (+) True G299437
TU411698 lncRNA upstream 264148 1467881 ~ 1567890 (+) True G299283
XR_002649354.1 lncRNA upstream 322649 1506920 ~ 1509389 (+) True LOC111191159
TU411702 lncRNA upstream 324007 1489671 ~ 1508031 (+) False LOC111191159
TU411927 lncRNA downstream 13338 1846239 ~ 1846495 (+) True G299472
TU411930 lncRNA downstream 21684 1854585 ~ 1854786 (+) True G299475
TU411934 lncRNA downstream 354432 2187333 ~ 2193652 (+) True G299477
TU411966 lncRNA downstream 354432 2187333 ~ 2197832 (+) False G299477
TU411969 lncRNA downstream 354432 2187333 ~ 2203232 (+) False G299477
XM_007231730.3 mRNA upstream 251102 1579110 ~ 1580936 (+) True LOC103044644
XM_022665255.1 mRNA upstream 264960 1562838 ~ 1567078 (+) True LOC103047296
XM_022665256.1 mRNA upstream 270009 1558494 ~ 1562029 (+) True LOC111188231
XM_022665239.1 mRNA upstream 329058 1492578 ~ 1502980 (+) True traf6
XM_022665217.1 mRNA upstream 402799 1419036 ~ 1429239 (+) False LOC103021976
XM_022665286.1 mRNA downstream 565816 2398717 ~ 2927862 (+) True LOC103025330
XM_007246944.3 mRNA downstream 1824958 3657859 ~ 3745126 (+) True tshz3
XM_022665249.1 mRNA downstream 3029295 4862196 ~ 4894687 (+) True LOC103030650
XM_022665204.1 mRNA downstream 3069733 4902634 ~ 5024425 (+) False madd
XM_022665179.1 mRNA downstream 3069734 4902635 ~ 5024834 (+) False madd
TU411691 other upstream 265344 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 507184 1324420 ~ 1324854 (+) True G299236
TU411607 other upstream 613932 1217809 ~ 1218106 (+) True G299226
TU411377 other upstream 1125214 705160 ~ 706824 (+) True G299046
TU411298 other upstream 1361418 462414 ~ 470620 (+) True G299000
TU411938 other downstream 363278 2196179 ~ 2204255 (+) False G299477
TU411947 other downstream 363278 2196179 ~ 2204255 (+) False G299477
TU412046 other downstream 777478 2610379 ~ 2636008 (+) False LOC103025330
TU412522 other downstream 3335725 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 3335725 5168626 ~ 5170108 (+) True G299903

Expression Profile