RNA id: TU411960


Basic Information

Item Value
RNA id TU411960
length 867
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G299477
representative False

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 2187333 ~ 2204255 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaaatgcagatatttcaaaatggccgacttcctgttgggcggagtcagtcctaccaatgctgaaaatgtgtgtaatgatgtcttttgtgtttttgccaagtttcatgaattttcaataatctgttttctgaccgtgtcatggtttcactttggtttagtgttgcgtctctagtgactcaattgctcgccattgggtcaccgttttaccgatcaactaatcctttggcaattatcatcaaatatgtctgttgttcatttacagcgaaataagaggtaatctgacaaagactttaggagcagtttaaatgagtttgtgaaaaaaagtgtaaaaatattacaaattccaatatggccgacttcctgttgggcggagctaatacaagccaattgcaaatatgtgcagggtcatactatctacgatcctaccaaaatttgagaagattagacaaattttgacacatccacagctaatttattaaacaaacgaattagggggcgctgtagagtctgctagctatacatgaaaaaattgtcaaaatatttgtaaagtgtttttaggtcttatgcaatctgtcaattttcaagaggttttgagcattcccgtaatgtcaaatatgcattgaaacctaggtggcgctatagagccaatgaaatacgtatacaagaaattttaatttcagatgaaagtACTGCTTAattcaagcaggcctgtaaattttcgagagttttcaacctttttaacctcctcaaacacctactaacaccagaatgtattcacttcctgttttaatggggcatctcaagcagttcaactgtccgccatttcgtcctcgtttaagatatcgactattccttcgcaatttatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411930 lncRNA upstream 334198 1854585 ~ 1854786 (+) True G299475
TU411927 lncRNA upstream 342489 1846239 ~ 1846495 (+) True G299472
TU411912 lncRNA upstream 356083 1832038 ~ 1832901 (+) True G299458
TU411892 lncRNA upstream 465703 1722234 ~ 1723281 (+) True G299438
TU411891 lncRNA upstream 466885 1720922 ~ 1722099 (+) True G299437
TU411971 lncRNA downstream 4081 2194889 ~ 2203232 (+) False G299477
TU411945 lncRNA downstream 4557 2195365 ~ 2203232 (+) False G299477
TU411968 lncRNA downstream 4557 2195365 ~ 2203232 (+) False G299477
TU412018 lncRNA downstream 109728 2300536 ~ 2306135 (+) True G299494
TU412021 lncRNA downstream 124585 2315393 ~ 2315902 (+) True G299496
XM_007231730.3 mRNA upstream 608048 1579110 ~ 1580936 (+) True LOC103044644
XM_022665255.1 mRNA upstream 621906 1562838 ~ 1567078 (+) True LOC103047296
XM_022665256.1 mRNA upstream 626955 1558494 ~ 1562029 (+) True LOC111188231
XM_022665239.1 mRNA upstream 686004 1492578 ~ 1502980 (+) True traf6
XM_022665217.1 mRNA upstream 759745 1419036 ~ 1429239 (+) False LOC103021976
XM_022665286.1 mRNA downstream 207909 2398717 ~ 2927862 (+) True LOC103025330
XM_007246944.3 mRNA downstream 1467051 3657859 ~ 3745126 (+) True tshz3
XM_022665249.1 mRNA downstream 2671388 4862196 ~ 4894687 (+) True LOC103030650
XM_022665204.1 mRNA downstream 2711826 4902634 ~ 5024425 (+) False madd
XM_022665179.1 mRNA downstream 2711827 4902635 ~ 5024834 (+) False madd
TU411691 other upstream 622290 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 864130 1324420 ~ 1324854 (+) True G299236
TU411607 other upstream 970878 1217809 ~ 1218106 (+) True G299226
TU411377 other upstream 1482160 705160 ~ 706824 (+) True G299046
TU411298 other upstream 1718364 462414 ~ 470620 (+) True G299000
TU411938 other downstream 5371 2196179 ~ 2204255 (+) False G299477
TU411947 other downstream 5371 2196179 ~ 2204255 (+) False G299477
TU412046 other downstream 419571 2610379 ~ 2636008 (+) False LOC103025330
TU412522 other downstream 2977818 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 2977818 5168626 ~ 5170108 (+) True G299903

Expression Profile