RNA id: TU412039


Basic Information

Item Value
RNA id TU412039
length 426
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G299510
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 2342917 ~ 2343342 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcttaacacctctaacacactaactacttctaacctcatttccttcttcctctccttcactcctctatcctattactcccctttgacctccttttatccctatccaaagttgtttttacctttaaacttattttacattgtacttgactattgtaagtcgctttggacaaaagcgtctgccaaatgtaatgtaatgtaatgtaatgtaatgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412027 lncRNA upstream 815 2333614 ~ 2342102 (+) True G299501
TU412021 lncRNA upstream 27015 2315393 ~ 2315902 (+) True G299496
TU412018 lncRNA upstream 36782 2300536 ~ 2306135 (+) True G299494
TU411971 lncRNA upstream 139685 2194889 ~ 2203232 (+) False G299477
TU412052 lncRNA downstream 91196 2434538 ~ 2436421 (+) True G299521
TU412076 lncRNA downstream 464446 2807788 ~ 2808515 (+) True G299545
TU412079 lncRNA downstream 509512 2852854 ~ 2854096 (+) True G299548
TU412080 lncRNA downstream 509512 2852854 ~ 2854096 (+) False G299548
TU412089 lncRNA downstream 575777 2919119 ~ 2961533 (+) True G299557
XM_007231730.3 mRNA upstream 761981 1579110 ~ 1580936 (+) True LOC103044644
XM_022665255.1 mRNA upstream 775839 1562838 ~ 1567078 (+) True LOC103047296
XM_022665256.1 mRNA upstream 780888 1558494 ~ 1562029 (+) True LOC111188231
XM_022665239.1 mRNA upstream 839937 1492578 ~ 1502980 (+) True traf6
XM_022665217.1 mRNA upstream 913678 1419036 ~ 1429239 (+) False LOC103021976
XM_022665286.1 mRNA downstream 55375 2398717 ~ 2927862 (+) True LOC103025330
XM_007246944.3 mRNA downstream 1314517 3657859 ~ 3745126 (+) True tshz3
XM_022665249.1 mRNA downstream 2518854 4862196 ~ 4894687 (+) True LOC103030650
XM_022665204.1 mRNA downstream 2559292 4902634 ~ 5024425 (+) False madd
XM_022665179.1 mRNA downstream 2559293 4902635 ~ 5024834 (+) False madd
TU411938 other upstream 138662 2196179 ~ 2204255 (+) False G299477
TU411947 other upstream 138662 2196179 ~ 2204255 (+) False G299477
TU411691 other upstream 776223 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 1018063 1324420 ~ 1324854 (+) True G299236
TU411607 other upstream 1124811 1217809 ~ 1218106 (+) True G299226
TU412046 other downstream 267037 2610379 ~ 2636008 (+) False LOC103025330
TU412522 other downstream 2825284 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 2825284 5168626 ~ 5170108 (+) True G299903

Expression Profile