RNA id: TU412178


Basic Information

Item Value
RNA id TU412178
length 397
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G299640
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 3029564 ~ 3030986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTACCTGGCGTGCAAAATAAAAGCACACTCCGAGTCTTTTAATTAAAGCCGTCTACTGAAGGCATGTGCGACTCGTCCTCATCAGCGGGTGAAAGAAACACTTCCAGCCATAGCGGCTGCTTTTCTGAGGAGACGGAGAGAAGAAGGGATTTAAAAaACTCTTCTAGGTCGAGCTCTCCCACTAACAAAAACTCTGAGTCTCTCCCAGCAGGATGTTCTGAAGAGAGAACTGGAGACATATATGCTTCAGACTCTTCTAGGTCGAGCTCTCCCACTAACAAAGACTCAGAGTCTCTCCCAGCAGGATGTCCTGGAAAGAGAACTGGAGACGTATACACTTCATGTAAGGgttttgtatatatgtgtatatatatgaatatattatatactggcTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412089 lncRNA upstream 68031 2919119 ~ 2961533 (+) True G299557
TU412093 lncRNA upstream 93125 2936058 ~ 2936439 (+) True G299561
TU412047 lncRNA upstream 100497 2928175 ~ 2929067 (+) True G299516
TU412079 lncRNA upstream 175468 2852854 ~ 2854096 (+) True G299548
TU412080 lncRNA upstream 175468 2852854 ~ 2854096 (+) False G299548
TU412180 lncRNA downstream 31835 3062821 ~ 3063122 (+) True G299641
TU412220 lncRNA downstream 168959 3199945 ~ 3200191 (+) True G299669
TU412221 lncRNA downstream 197633 3228619 ~ 3229010 (+) True G299670
TU412230 lncRNA downstream 329303 3360289 ~ 3360553 (+) True G299679
TU412236 lncRNA downstream 364645 3395631 ~ 3396080 (+) True G299685
XM_022665286.1 mRNA upstream 101702 2398717 ~ 2927862 (+) True LOC103025330
XM_007231730.3 mRNA upstream 1448628 1579110 ~ 1580936 (+) True LOC103044644
XM_022665255.1 mRNA upstream 1462486 1562838 ~ 1567078 (+) True LOC103047296
XM_022665256.1 mRNA upstream 1467535 1558494 ~ 1562029 (+) True LOC111188231
XM_022665239.1 mRNA upstream 1526584 1492578 ~ 1502980 (+) True traf6
XM_007246944.3 mRNA downstream 626873 3657859 ~ 3745126 (+) True tshz3
XM_022665249.1 mRNA downstream 1831210 4862196 ~ 4894687 (+) True LOC103030650
XM_022665204.1 mRNA downstream 1871648 4902634 ~ 5024425 (+) False madd
XM_022665179.1 mRNA downstream 1871649 4902635 ~ 5024834 (+) False madd
XM_022665180.1 mRNA downstream 1871649 4902635 ~ 5024425 (+) False madd
TU412046 other upstream 393556 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 825309 2196179 ~ 2204255 (+) False G299477
TU411947 other upstream 825309 2196179 ~ 2204255 (+) False G299477
TU411691 other upstream 1462870 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 1704710 1324420 ~ 1324854 (+) True G299236
TU412522 other downstream 2137640 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 2137640 5168626 ~ 5170108 (+) True G299903

Expression Profile