RNA id: TU412221


Basic Information

Item Value
RNA id TU412221
length 392
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G299670
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 3228619 ~ 3229010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatatatatatatatataaataacaaagataaacaagtaacaaagaacacgtaataataaagtaaaccaaaacaaacgagaggaactagtgaacataaactaaacaaacaagaagtactaaatatatataaatacaaacagggagtaaataaacaaagaaacaaacaaagctaagaacataaacaaggaataaacaagaaactagaaactaccaaaaataaccaagaaataaccaaaactaaacagggcagggatatatatacaagggaaacaacaagaagcaaaacactaagaaataaacaaggaaatagactatatatatatggcaaaaacagagaacagagaaacgctAAGAGGACTgataacactgagagagacaaaacaacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412220 lncRNA upstream 28428 3199945 ~ 3200191 (+) True G299669
TU412180 lncRNA upstream 165497 3062821 ~ 3063122 (+) True G299641
TU412178 lncRNA upstream 197633 3029564 ~ 3030986 (+) True G299640
TU412089 lncRNA upstream 267086 2919119 ~ 2961533 (+) True G299557
TU412230 lncRNA downstream 131279 3360289 ~ 3360553 (+) True G299679
TU412236 lncRNA downstream 166621 3395631 ~ 3396080 (+) True G299685
TU412245 lncRNA downstream 311325 3540335 ~ 3541034 (+) True G299694
TU412251 lncRNA downstream 328421 3557431 ~ 3557840 (+) True G299700
TU412266 lncRNA downstream 468094 3697104 ~ 3705830 (+) True G299712
XM_022665286.1 mRNA upstream 300757 2398717 ~ 2927862 (+) True LOC103025330
XM_007231730.3 mRNA upstream 1647683 1579110 ~ 1580936 (+) True LOC103044644
XM_022665255.1 mRNA upstream 1661541 1562838 ~ 1567078 (+) True LOC103047296
XM_022665256.1 mRNA upstream 1666590 1558494 ~ 1562029 (+) True LOC111188231
XM_022665239.1 mRNA upstream 1725639 1492578 ~ 1502980 (+) True traf6
XM_007246944.3 mRNA downstream 428849 3657859 ~ 3745126 (+) True tshz3
XM_022665249.1 mRNA downstream 1633186 4862196 ~ 4894687 (+) True LOC103030650
XM_022665204.1 mRNA downstream 1673624 4902634 ~ 5024425 (+) False madd
XM_022665179.1 mRNA downstream 1673625 4902635 ~ 5024834 (+) False madd
XM_022665180.1 mRNA downstream 1673625 4902635 ~ 5024425 (+) False madd
TU412046 other upstream 592611 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 1024364 2196179 ~ 2204255 (+) False G299477
TU411947 other upstream 1024364 2196179 ~ 2204255 (+) False G299477
TU411691 other upstream 1661925 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 1903765 1324420 ~ 1324854 (+) True G299236
TU412522 other downstream 1939616 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 1939616 5168626 ~ 5170108 (+) True G299903

Expression Profile