RNA id: TU412354


Basic Information

Item Value
RNA id TU412354
length 487
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G299774
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 4127242 ~ 4203962 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgagagagagagagagagagagagagatctgtgtCGAGATGAAACAGGTGTCAGGTGTGCAGAGATTTGCATAcagctgtattttattcatgtgaACATATAGAGTAACGTACACATTTAAATCATGTAAATACAATACATCATTCATTCTGCTCGTTCTGCTCGTCTCTCAGCGCATCTTTCGTTTAGTTTATAGTAGCAGTTCATGGTAACCTGTTGCCACTCTAAgagttttaagactttttttaataccattCAGCAACATAATTCAGAATTCAGACCACTTTAACAACATGGCAGATACTGTAGCACACAACaccaaatattacattttattaatattaagtaaGCTTGTGATTCCTTGTATTTTCTGACATATcaatacaaaaaagaaacatacaTATGATTCCTTTCTGTGGCACATTGAAAAacctttaagactttttttttttttttataagctatggaaaggttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412343 lncRNA upstream 23432 4003821 ~ 4103810 (+) True G299765
TU412317 lncRNA upstream 268246 3858582 ~ 3858996 (+) True G299749
TU412312 lncRNA upstream 337771 3789264 ~ 3789471 (+) True G299744
TU412266 lncRNA upstream 421412 3697104 ~ 3705830 (+) True G299712
TU412251 lncRNA upstream 569402 3557431 ~ 3557840 (+) True G299700
TU412442 lncRNA downstream 377190 4581152 ~ 4581412 (+) True G299856
TU412449 lncRNA downstream 474546 4678508 ~ 4678831 (+) True G299863
TU412477 lncRNA downstream 614793 4818755 ~ 4900284 (+) False G299872
TU412485 lncRNA downstream 636514 4840476 ~ 4897072 (+) False G299872
TU412483 lncRNA downstream 656211 4860173 ~ 4900284 (+) True G299872
XM_007246944.3 mRNA upstream 382116 3657859 ~ 3745126 (+) True tshz3
XM_022665286.1 mRNA upstream 1199380 2398717 ~ 2927862 (+) True LOC103025330
XM_007231730.3 mRNA upstream 2546306 1579110 ~ 1580936 (+) True LOC103044644
XM_022665255.1 mRNA upstream 2560164 1562838 ~ 1567078 (+) True LOC103047296
XM_022665256.1 mRNA upstream 2565213 1558494 ~ 1562029 (+) True LOC111188231
XM_022665249.1 mRNA downstream 658234 4862196 ~ 4894687 (+) True LOC103030650
XM_022665204.1 mRNA downstream 698672 4902634 ~ 5024425 (+) False madd
XM_022665179.1 mRNA downstream 698673 4902635 ~ 5024834 (+) False madd
XM_022665180.1 mRNA downstream 698673 4902635 ~ 5024425 (+) False madd
XM_022665185.1 mRNA downstream 698673 4902635 ~ 5024425 (+) False madd
TU412046 other upstream 1491234 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 1922987 2196179 ~ 2204255 (+) False G299477
TU411947 other upstream 1922987 2196179 ~ 2204255 (+) False G299477
TU411691 other upstream 2560548 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 2802388 1324420 ~ 1324854 (+) True G299236
TU412522 other downstream 964664 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 964664 5168626 ~ 5170108 (+) True G299903

Expression Profile