RNA id: XM_022665185.1


Basic Information

Item Value
RNA id XM_022665185.1
length 5567
RNA type mRNA
GC content 0.57
exon number 41
gene id madd
representative False

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 4902634 ~ 5027421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcagcagcagcagcagcagcgcttcACAGTGAGAGCGGAGCTCGGGCTGATGAAGTGGGAGAGTTTATTCAGccatttatttcatatttaaccCTCAGAGAGCGGTTGTCTGCGCTTCAACGGATCACCTGCAGTCTCTTCACAGTCTCCACCAGCATGCCTGCAGGATTTACCGCCTTAAAGACGCTTATTTAGAGAGAAAAGGGCGGAAAGGCAGCGGGAGAGAAGCGGAGCGGAGCGGCGGCGGTGGCGGTGGCGGAGGAGACGGTTAGCTAGCCTAGTTGACTAGCTGCTTAGCTGGTTGGCTAGCTACGTAGGCTAACAGGCGAGCTGCTGGAGGAGGACGCGTTCCCGCATGGCCCTCTGCACGATGGTTGGATGCTGCCAGTCTGCGTCTGCCCGCTCCTAGCTCTGCTGCATCCTGATTGGACGGAATCTGTGACGAGGGATAATTTCCATGGTTGCCATGACTTAAAAATACTGCTCGCCTAAagatggagaaaaagaaaatgtgtccCCGCCTCCTGGACTACCTCGTGGTAGTTGGAGCCAGGCAGCCCAGTAGTGACAGTGTGGCTCAGACGCCGCAGCTGCTGAGACGCTACCCACTGGAGGATCATCCAGACTTTCCTCTGCCGCCGGACGTGGTGTTCTTCTGCCAGCCTGAGGGCTGCCTGAGTATCCGGCAGCGCCGGGTCAGCCTCCGCGACGACTCGTCCTTCGTCTTCGCACTCACTGATAAGGACTCGGGCATCACGCGATATGGCATCTGCGTCAACTTCTACCGATCCTTCCAGAGGGGCCATCACCGCCCACGGGCAGAGGGCAAAGACAAGCCCCCTCAGATGGACCCTGCAGTCGAAGCCACAGAGAAGTCCGACCCCtccacgctctctctctccggcgACTCCACAGCGCCCCCGGCTGCAGATGGAGCGGTACCGCCGGGCGAGGGGGGCGGTGGGAAGTCGCCGCGGCCCAAACGCAGCAGAGCGGCAGCGCGGAACCGGAACAGCACGCTGACGTCTCTGTGCATGCTGAGCCACTACCCGTTCTTCTCCACCTTCAGAGAGTGTTTGTACATCCTCAAACGCATGGTGGACTGCTGCAGCCACCGCCTCAACCAGAGACCCGGCGCTGCCAAGGGCACCCAGCGGGATGCTATGTGGCGCGTGTTCACTGGCGCTCTTTCAGTGGAGGAGAAGGAAAAGGGCAGTCAGCTGCTGCAGGACCTGAAGGAGATTGAGTCGTGGGTGTACCGGCTGTTGCGTTCTCCGGTTCCTGTAGCGGGTCTCAGGCGTGTGGACGTGGAGGTTCTTCCTCACGAGCTGCAGCCAGCGCTCACCTTCGCCCTGCCAGACTCGTCTCGCTTCTGCATGGTGGACTTTCCTCTCCACCTGCCGCTGGAGCTTCTGGGGGTGGATGCCTGCCTGAAGGTGCTCAGCTGCATCCTTCTGGAGCACAAGGTGGTACTGCAGTCTCGGGACTACAACGCTCTCTCTATGAGCGTCATGGCGTTTGTAGCCATGATCTACCCTCTGGAGTACATGTTCCCAGTCATTCCTCTGCTCCCCACATGCATGGCCTCCGCCGAACAGCTCCTGCTAGCCCCGACTCCATACATCATTGGTGTGCCTGCCAGCTTCTTCCTGTACAAGTCGGACTTTAAGATGCCTGATGATGTCTGGCTGGTGGATCTAGACTGTAACAAGGTCATTGCACCTAGCAATGCAGAACTCCTCCCACCTTTACCTGAACCAGAATCCTCAGAGCTGAAGAAACACCTGAAACAGCTTTTGGAGTGTCTGGTCAGGTTGACTGTGATCACCCAAAAGCAGATCTTCGCCTCCGACTCCAAGGCTCTGGCCAGTATGAGTCTGAACACTCAGCCCATTCTGAACTTTGAGAAGTTCCAGGAGGGCCAGGAGCTGCCCCTGCTGCCCCCAGGACGGGACAAGTCCTCCCCCTCGTCCACAGAGTTTAACCCTCTCATCTACGGCAATGATGTGGACTCGGTGGACGTGGCCACGAGGGTGGCGATGGTGAGGTTCTTCAACTCTCCGAACGTTCTGCAGGGGTTCCAGATGCACACTCGCACCCTGCGGCTGTTCCCGCGGCCCGTGGTCGCCTTTCAGGCCACCTCTTTCCTGGCTTCCCGTCCGAGACGCACCGGATTCGCCGATAAACTCTCCCACACGCAGGCTGTGGAGTATTATGGAGAGTGGGCCCTAAACCCCACTAACCTGGCCTTCCAGAGGATCCATAACAATGTGTATGACCCGTCTCTAATCGGCGATAAGCCCAAATGGTACGCTCACCAGCTGCAGCCCGTGTTTTATCGAGTGTATGATGGGAATTCACAGCTTGCAGAGGCTCTGAGTGGACCACTGGAGGACGAGGCCAATGACTCAGACCCTACAGATGACAGtgGCAGCGACAGCGAGGCGTACGACGACTCCAGCTCTTCCTACTCCTCACTCGGAGACTTTGTGAATGAGATGATCAAAGGGGACATACAGGGAGACACGCCGAATGTGGATCCCCTGACCCATGCAGCTCTTGAAGATGCTAATGAGGTGGAGATCCACGACTTTCAGGAGTATAAGGAGGAGGGTGGAGAGCGAGCGCCTGAAACGGAGGGACCTGCCGAGGCTGCGGACAGCCAGCCGCTccgctccagctccagcaccacgGCCAGCTCCAGCCCCAGCACCGTCATACAGGGAGTCAATCACgaGGCAACAGAGGCTGTTGAGTTGGAGGCGTCGGCTACTGCAGCGCTGCAGAACTCCGTCCCGGGATTGGTTCCTCCACCGTTTACAAGACCCGTCCCTGAACCGACCCCCGCAGACCTGGCCAATAAGAAGCGGGAGTACGATAACCCGTATTTTGAGCCCCAGTACGGCTTTCCTGCGGAGGAGGAGGCTGACGgtgaggagcaggaggagagcTACACTCCCCGCTTCAACCAGAACATCAACGGAAACAAGCTGTCCCGCCCGTTGAGACCCAGCAGCCTGAAGCTCCCGGGTGAATCTGATGGCGAGGACTCTAAGAACAGCTCACCCAACTCCACCATCTCCAACAACAGCAGCGACGGGTTCGGAGGACTCATGTCTTTTGCCAgtaacTTATATAAGAACCACGGCACCAGCTTCAGTCTATCCAGCCTGGCTCTCCCTAATAAAGCTGCTAGAGAGAAGAACACCCCCTTCCCCAGCCTTAAAGGATGGTTTAATTTTGAGTTAGACGATGAGGCGGATCAAGATGATGGTGATGAGAGTCCTGAGAGTCCCGTATTTGGGCTAAATTCTCTAATGGAGATTATAACAGAGGTCGGCCCGGGGAGCGGAGAAGGTGCTCGTGCCCCTCGTGCACTGGTGGATCAAAAGTCGTCTGTTATAAAGCACAGCCCTACAGTAAAGAGGGAGCCTCCTTCACCCCAGGGACGAGCCAACAATACCAGTGAAAACCAGCAGTTCCTGAAGGAGGTGGTGCAGAGCGTGCTGGAAGGGCAAGGTGTCGGCTGGCTCAACATGAAGAAAGTGCGCCGCCTGCTGGAGAACGAGCAGCTGCGCATCTTTGTACTTAGTAAACTCAACCGCGCCGTCCAATCAGAGGAGGACGCTCGCCAGGAAGTCATCAGAGATGTGgAGATTAACAGGAAGGTGTATAAGGGCATGCTGGACCTGCTGAAATGCACAGTCTCCAGTTTGGAGCACTCCTACACTAATGCAGGGCTAGGGGGCATGGCCAGCGTCTTCAGCCTGTTAGAGATCGCACGAACCCACTACCAAACCAAAGACCCCGAGAAGCGAAAGCGGAGTCCCACCGACGGGGCGAGCAGCCCGGGCAGCAAGGAGAGCCCGTCTGTCCGCATGGAGAGCGCCAGGGCGGCGGGCGTGCTCCTGGTGCCACGCATTCAGCTGCCACCCCCTTCCTCCGGGAAAGGGGGGCACCAGTTTGACACCCGGAGTCTGAACGAAGAGAATTTTATTGCGTCTATTGGGGCTGATGGGGCAAAGCAGCGTCCAGAAGGGGGCGACACTGAGGAGAAGAAGTCTCAGATCAGTGCAGACAGTGGGCTCAGCGTCACCTCAGGATCTCAGAAAAGCGATTCGGAATCATTGGCGAGTTCAGAGCCTCCAGCTCTGACCAGGAGCACCAGTCAGGACTCTGAGGCCAGCACAGTGGTGAGTAACAGCTCAGGTGAGACGCTGGGTGCTGACAGCGACCTGAGCAGCACAGCTGGAGATGGACTGACGGGTCGGCCCTCTCCACACCTCGCTCTGTCCCGCGGTACTCTCTCAGACAGCGAGATAGAGACCAATCCTGCTACCAGCTCTGTGTTTGGGAAGACCCATAAGCTGAAGCCAGGAGCGAAGGAGCCTGCTGGGGGTGTGGCTAAGGGAGCTCCTGCCCCGCCCCTTGAAGATGTCAGCATGAGGATCTACCTGTGCGAGGGGCTGCTGGGGAGAGATAAGAGCTCAGTGTGGGATCAGCTGGAGGACGCTGCCATGGAAACCTTCTCTCTGAgtAAGGAGCGCTCCACTCTGTGGGATCAGGTGCAGTTCTGGGAGGACGCTTTTCTGGATGCTGTGATGCTTGAAAGAGAGGGGATGGGTATGGATCAGGGACCACAAGAGATGATTGACAGGTACCTGTCGCTGGGTGATCACGACCGTAAGAGGCTGGAGGATGATGAGGACAGACTGCTGGCCACTCTGTTGCACAATATGATAGCCTACATGCTAATGACGAAGGTGTCCAAAAACGACATCAGGAAGAAGGTCCGGCGTTTGATGGGGAAATCTCACATCGGCCTGACCTACAGCCAGGAGATCAACGAGGTTCTGGACCGTCTTCCACAGCTGACCGGAAGGGAGCTTCCCATAAGGCCGAGCGGGAGTCGCCATATAAAGAAGCAGACTTTTGTGGTGCATGCTGGGACTGATACCACAGGGGATATATTCTTTATGGAGGTGTGTGACGACTGCATCGTACTGCGCAGTAATATTGGAACAGTGTACGAGCGCTGGTGGTACGAGAAGCTGATCAATATGACCTACTGCCCCAAGACCAAAGTGCTGTGCTTGTGGAGGAGAAACGGACAGGAGACGCAGCTCAACAAGTTCTACACCAAGAAGTGTCGGGAACTGTACTACTGCGTCAAGGACAGTATGGAGCGTGCAGCAGCACGGCAGCAAAGCATCAAACCAGgtccTGAGCTGGGAGGAGAATTCCCGGTGCAGGATATGAAGACGGGAGAAGGTGGTCTCCTGCAGGTCACTCTCGAGGGAATCAACCTCAAATTTATGCACAGCCAGGAGCGGAAGgtTTTCATAGAGCTGAATCACATTAAAAAGTGCAATACAGTGAAGGGAGTCTTTGTCCTGGAGGAATTTGTTCCTGAAACTAAAGAAGTGGTGATCCACAAGTACAAGACTCCAATGgCACATCAGATCTGTTACTCCGTGCTCTGTCTCTTCTCCTACATGGCTGCAGTGAAGGGAAAAGAGACGGAGGGCAAACCCAAGATGCTGTCCCCTCGTCCACTGCCCAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412477 lncRNA upstream 2351 4818755 ~ 4900284 (+) False G299872
TU412512 lncRNA downstream 41672 5066097 ~ 5067622 (+) True G299896
TU412517 lncRNA downstream 101533 5125958 ~ 5209533 (+) True G299901
TU412544 lncRNA downstream 186297 5210722 ~ 5248094 (+) True G299912
TU412551 lncRNA downstream 224793 5249218 ~ 5249612 (+) True G299918
XR_002649359.1 lncRNA downstream 226597 5251022 ~ 5251412 (+) True LOC111191167
XM_022665249.1 mRNA upstream 7948 4862196 ~ 4894687 (+) True LOC103030650
XM_007246944.3 mRNA upstream 1157509 3657859 ~ 3745126 (+) True tshz3
XM_022665286.1 mRNA upstream 1974773 2398717 ~ 2927862 (+) True LOC103025330
XM_007231730.3 mRNA upstream 3321699 1579110 ~ 1580936 (+) True LOC103044644
XM_022665255.1 mRNA upstream 3335557 1562838 ~ 1567078 (+) True LOC103047296
XM_007246935.3 mRNA downstream 107468 5131893 ~ 5144884 (+) True muc15
XM_022665253.1 mRNA downstream 122544 5146969 ~ 5167298 (+) True dis3l
XM_022665252.1 mRNA downstream 122545 5146970 ~ 5166188 (+) False dis3l
NM_001320206.1 mRNA downstream 174373 5198798 ~ 5205566 (+) True LOC103028443
XM_022665285.1 mRNA downstream 229700 5254125 ~ 5256071 (+) False LOC111191166
TU412046 other upstream 2266627 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 2698380 2196179 ~ 2204255 (+) False G299477
TU411947 other upstream 2698380 2196179 ~ 2204255 (+) False G299477
TU411691 other upstream 3335941 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 3577781 1324420 ~ 1324854 (+) True G299236
TU412522 other downstream 144201 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 144201 5168626 ~ 5170108 (+) True G299903