RNA id: TU412477


Basic Information

Item Value
RNA id TU412477
length 2396
lncRNA type sense_over
GC content 0.34
exon number 2
gene id G299872
representative False

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 4818755 ~ 4900284 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaaaaaaaaaacatacaGATAACCTCAGAATAGCTACAGTACAGGAGTCAGTGGTACAGTAGCTCTTATAGGAGTTATAATGAGTAACACCGAGCACTTTATATAGAGTGCAGGATGCTGGGCTTGGAGTTATAGGCTAGACACAAATCAATGCAAATCTCTAAgatgttactttattattatttttttgtaatagtaCTGTTATTATCACTGTTGttaatattattcattattcagaATTCGTATTGTTCATTGTTTCAACACAggattttttctattttctatttaaaaaccCAAATTTAGGAATAATACATAGTGAACATACagagttaaaaaatacattgattattaattaaattatatctaattttatcccattttctacccaatttgGAAGTCCAACTACCCAATTCCAATTGACATCAACTCCTAACTCAAGGAGAGTGAAGACcggcacatgcctcctctgatactcTGATGTGAAtgcagactccgcctctttgcAAATTGTCACCAATCAATAATGCGTCAATACTACAGGCTAACCGAAACCAAAATGCACAATCGGAGGAAAAAAAGAGCTTCATCACTCTATTAGCATTTTTCTCCACTTAATTTTGAACCTGTTGCtgtgtttccaccaacaaaagtaggtttcAGAACCAGGAACGGTTGCTTTCAGTGGGATCtaaagaatactaggttcttcagcgCGAACTGTGACCGCTTCTGTTCACCACCGCTGTGCCACGCCCTTTGATGATGAtgtatgatgtgtttttttttttttttttcactaaaactggtggaaacgtgGGTTCGATTAACTAAAAAGCACCATGGTTCTTATAAGCTGGTTCAGATACCAAAGctcttttggtggaaaatcGCTCTAGGAgatatctacccacccagaagaGAGCACGGCCAACTGTATgcgctctctctgactctggctgctgatgccaagcagcGTAATCCAGGCATAAGATTTAAAACTAAACCCTTGTGCCACCGGAACAGCTCTGATGCATTGAGGTAGACTCATTCTGTGGTGTCTGGCAATAAGGTTATATTCGCCCAATAAGTACCAATATCCTGGACTTCATTCttccaaataaatcaaattactgaataattaatttagaataaagagttaagtaattattattaggTAATTTCGTGCTTTGCTTGTATGTCTGCTAGGATATTAACCATGtcaagtgtttaaaaaatatttttaaaaagtaaaaagacaaCAATGCATTTAGgcgatttaatttattaatcctTGAAATAAttgatacattaaaaaaatcacatttggttttctgtttttgaaaaaaaaaaaaaatcatttttctttttaattttcactTCAGTACATCCATAATATGAACCTTATGTGCTAAAACTTGACCTGAGAACTTgacgcattttttttttctttctgcattCTCTGTAGTGCTGACTTTTGggactcttattttgaaatattttgttgATGTCAGCAATGTCTGTTTCTTTAACAATTTACAGTTTAGTTTAATTGTTAAAATGCTGTTTGGGAGACTGATTAATTGATTTGCATTGAAACTAAAGCCTTTTATCTAAAAATGGGGATAAAGAACAATGAGAAATTAGGAAAGAAAGCATActaatatatatcaaatatatatatatacgcacagatcaagcataacattatgaccacctcctttaTCCATACAATGATAGATAATAGGTGTTGAAACAAGGAGGTTGCAATACATGTATGCTTGATTGgtgtacagtatattagtatattgtaTTAGTGAACCTGTGTGATCCTTTGAGCTGTACGTCAGTccatgaattaaataaatatattttgtttttaaagcccCAAATATAGGAAACACTTTCAGTTGTAACTCAATTTCACAGCAGTGCTACATCAGCCTGCGCTTTTATTAATGTTTGCATTTAACAGAATGGTAATGACCCGACCGAGCGAGCGTTCAGTACAGGGCTGAtgattgtaataataatttattttctatgtcCAGCTGGGCAGACCTTTACTCTTCAATTAACCTGACCTCCTGTGGTGTGGCATCTAAAGATGGGTGATTATAGGAACGTGATCTTCTGTTTTAACGCCTTAAGTCcttggataaactgctttataTGTGTAAATTAAAATTCTGAcaaattttattgttataaatatatatatatatttgtttgttgaaCTGAAAAGCTGAGAAATGTAGATGACTAAACACCTCAACTATTCTTTATACAGAGATATATTGACCTGAAACATGGAACTGCTCACTGTCTGTCTTTTTATTCTTCTGCAGTTTTTCATAGATTGAGTTTACCTTGTAAATAAACTTGAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412449 lncRNA upstream 139924 4678508 ~ 4678831 (+) True G299863
TU412442 lncRNA upstream 237343 4581152 ~ 4581412 (+) True G299856
TU412354 lncRNA upstream 614793 4127242 ~ 4203962 (+) True G299774
TU412344 lncRNA upstream 658173 4103395 ~ 4160582 (+) False G299765
TU412343 lncRNA upstream 714945 4003821 ~ 4103810 (+) True G299765
TU412499 lncRNA downstream 18817 4919101 ~ 4920975 (+) True G299885
TU412500 lncRNA downstream 70779 4971063 ~ 4971673 (+) True G299886
TU412467 lncRNA downstream 120653 5020937 ~ 5027421 (+) False madd
TU412512 lncRNA downstream 165813 5066097 ~ 5067622 (+) True G299896
TU412517 lncRNA downstream 225674 5125958 ~ 5209533 (+) True G299901
XM_007246944.3 mRNA upstream 1073629 3657859 ~ 3745126 (+) True tshz3
XM_022665286.1 mRNA upstream 1890893 2398717 ~ 2927862 (+) True LOC103025330
XM_007231730.3 mRNA upstream 3237819 1579110 ~ 1580936 (+) True LOC103044644
XM_022665255.1 mRNA upstream 3251677 1562838 ~ 1567078 (+) True LOC103047296
XM_022665256.1 mRNA upstream 3256726 1558494 ~ 1562029 (+) True LOC111188231
XM_022665204.1 mRNA downstream 2350 4902634 ~ 5024425 (+) False madd
XM_022665179.1 mRNA downstream 2351 4902635 ~ 5024834 (+) False madd
XM_022665180.1 mRNA downstream 2351 4902635 ~ 5024425 (+) False madd
XM_022665185.1 mRNA downstream 2351 4902635 ~ 5024425 (+) False madd
XM_022665186.1 mRNA downstream 2351 4902635 ~ 5024425 (+) False madd
TU412046 other upstream 2182747 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 2614500 2196179 ~ 2204255 (+) False G299477
TU411947 other upstream 2614500 2196179 ~ 2204255 (+) False G299477
TU411691 other upstream 3252061 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 3493901 1324420 ~ 1324854 (+) True G299236
TU412522 other downstream 268342 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 268342 5168626 ~ 5170108 (+) True G299903

Expression Profile