RNA id: TU412517


Basic Information

Item Value
RNA id TU412517
length 516
lncRNA type read_through
GC content 0.30
exon number 3
gene id G299901
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5125958 ~ 5209533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaattgaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaaactgaactgcttaaatttttgcaccaggagtaaagcagcataaatttatctaaaagcactgtgtaagactggtggaggaggagaacatgatgccacaatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattattcaagtctgaaagctctgtatcttttttgttattttagccatttcttattttctgcaaataaatgctctaaatggcaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttaattcaTTTATATAATGAGTTTACGGTTATTCAATGCAGATCATAGATAATAACACTGGAGCactcaaacaataaaataaacaaaaaagttttcaAAAGAAAATaaaaatggaa

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412512 lncRNA upstream 58336 5066097 ~ 5067622 (+) True G299896
TU412467 lncRNA upstream 98537 5020937 ~ 5027421 (+) False madd
TU412500 lncRNA upstream 154285 4971063 ~ 4971673 (+) True G299886
TU412499 lncRNA upstream 204983 4919101 ~ 4920975 (+) True G299885
TU412478 lncRNA upstream 225674 4891170 ~ 4900284 (+) False G299872
TU412544 lncRNA downstream 1189 5210722 ~ 5248094 (+) True G299912
TU412551 lncRNA downstream 39685 5249218 ~ 5249612 (+) True G299918
XR_002649359.1 lncRNA downstream 41489 5251022 ~ 5251412 (+) True LOC111191167
TU412555 lncRNA downstream 44041 5253574 ~ 5256311 (+) True LOC111191166
TU412563 lncRNA downstream 161417 5370950 ~ 5378087 (+) True G299925
XM_022665205.1 mRNA upstream 101124 4902637 ~ 5024834 (+) False madd
XM_022665285.1 mRNA downstream 44592 5254125 ~ 5256071 (+) False LOC111191166
XM_022665238.1 mRNA downstream 117984 5327517 ~ 5373340 (+) True LOC103027811
XM_022665228.1 mRNA downstream 232007 5441540 ~ 5533366 (+) True map2k5
XM_022665229.1 mRNA downstream 232007 5441540 ~ 5533366 (+) False map2k5
XM_022665277.1 mRNA downstream 334279 5543812 ~ 5548545 (+) True LOC111191164
TU412046 other upstream 2489950 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 2921703 2196179 ~ 2204255 (+) False G299477
TU411947 other upstream 2921703 2196179 ~ 2204255 (+) False G299477
TU411691 other upstream 3559264 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 3801104 1324420 ~ 1324854 (+) True G299236

Expression Profile