RNA id: XM_022665285.1


Basic Information

Item Value
RNA id XM_022665285.1
length 920
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC111191166
representative False

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5253574 ~ 5256311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCATGTCAAGCGTACTAAGACATTTGTGGAATCATGCATTGTTGGAGAGGATGCTACATCTGTTGAGGCCCATGTCAAGGCATTGCATGAACAGTACAGGAAGACACAACCTGATTTGGCGATCGTGAAGGACCGCATGAAAAAGACATTTGCATGGCGTCGTCGAGAAATATCAGAGGGAATGACCGttacaaacatcttgatgaaaTACCCGTTCTTAAGAACATCCTCAGGGTTGTATGACGAGGTTGATGCCATCCATCCTTTGACGGTGAACATTTGTCGTCGCTTCAACGAGGGATTTACAGCTTTACTCCCTAATTTGCTGAAACTTGTCAAGGGGACGTTGCCACTAAAAAAACTGTATGTGGAGGCGAGAGAGGAAGCTCTGGCTGAGGACCTTCCAGGCATTGACTTCAGGGGTGgacttgtttttttgccatcCATCTTCAGGGAGAACATTGACCACCTCATTTCACTTGGAGAGGGTGAACCTGCCACGCCGTATCCTACAATTCAGCTGAAAGACAAGGATTGGAAAACTGCCATTTCTAGACGAAGTCAGAGTGTGGTGAAGGTTGATGGAGTTGAGGTGTGCACTTGTGCTGCGATAGATGAGGCCTTCATCACAACCTTTTGTATGTATTTCACCTTCAACATTGCATACCCTCCACGGCTGAGAAATACCATGACATTTCTCCAGAGGTGCATTCTACACATCAAGGAGGAAGGAGACAAGCCATTGCCAGTAACTGTGACACGAGTGATGAATCTTCTGTAGATCTATGGCTCCACTGCACCAATGCCCAAAATGCCCACGTAGAACTTTCACCCTTGTAAAGCTTATACAACACATTGGACTTGTACATGCACACAAAGCTCACTTTAGCATTACTTGTGGTATAAATGATTGCTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649359.1 lncRNA upstream 2713 5251022 ~ 5251412 (+) True LOC111191167
TU412551 lncRNA upstream 4513 5249218 ~ 5249612 (+) True G299918
TU412544 lncRNA upstream 6031 5210722 ~ 5248094 (+) True G299912
TU412517 lncRNA upstream 44592 5125958 ~ 5209533 (+) True G299901
TU412512 lncRNA upstream 186503 5066097 ~ 5067622 (+) True G299896
TU412563 lncRNA downstream 114879 5370950 ~ 5378087 (+) True G299925
TU412574 lncRNA downstream 219989 5476060 ~ 5508588 (+) True G299934
TU412572 lncRNA downstream 265441 5521512 ~ 5535585 (+) True G299932
TU412578 lncRNA downstream 267164 5523235 ~ 5524082 (+) True G299938
TU412579 lncRNA downstream 290687 5546758 ~ 5548569 (+) False LOC111191164
NM_001320206.1 mRNA upstream 48559 5198798 ~ 5205566 (+) True LOC103028443
XM_022665253.1 mRNA upstream 86827 5146969 ~ 5167298 (+) True dis3l
XM_022665252.1 mRNA upstream 87937 5146970 ~ 5166188 (+) False dis3l
XM_007246935.3 mRNA upstream 109241 5131893 ~ 5144884 (+) True muc15
XM_022665200.1 mRNA upstream 229700 4902637 ~ 5024425 (+) False madd
XM_022665238.1 mRNA downstream 71446 5327517 ~ 5373340 (+) True LOC103027811
XM_022665228.1 mRNA downstream 185469 5441540 ~ 5533366 (+) True map2k5
XM_022665229.1 mRNA downstream 185469 5441540 ~ 5533366 (+) False map2k5
XM_022665277.1 mRNA downstream 287741 5543812 ~ 5548545 (+) True LOC111191164
XM_022665237.1 mRNA downstream 295026 5551097 ~ 5556415 (+) True LOC111191158
TU412522 other upstream 84017 5168626 ~ 5170108 (+) False G299903
TU412525 other upstream 84017 5168626 ~ 5170108 (+) True G299903
TU412046 other upstream 2618117 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 3049870 2196179 ~ 2204255 (+) False G299477

Expression Profile