RNA id: XM_022665277.1



Basic Information


Item Value
RNA id XM_022665277.1
length 2221
RNA type mRNA
GC content 0.65
exon number 3
gene id LOC111191164
representative True

Chromosome Information


Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5543812 ~ 5548569 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CATATGATAAGAAGTGGCGCGCGCGAACGAGCTCTGGGCCTGCCACGTGCTCACGGGTCTCCCACTCAGTCTCTTGCgcgcacacaacacacacacacacacacacggcacgAGCCCTGGGCTGACGGAGATGCGCGCTGTAGTCTGAGGCGCGCTGCCGAGGAGAGAGAGGATTCGCGGCGCAGGACGGCTTTAGACGGCTCTGGACGTGTTTGTGAACATTTGGAGCGACCGGGCCTCCAGCACTGTCTGAATTTCGTTGGGAAATAAAGTTCTCCACTCATGGAGGCTCTGAGCTCGCCCCTGCCCCCGGTCCGGGACTCCAGCTCTTCCCCGCGGCCTCCGGCCGACTTGCAGCCCTTCCCGGGCGGAGGAGGCTCGCTGAAGGCCAACACGGTGAGCGAGACGTGTCTGTACGGCGTGCCCATCGTGTCCCTGCTGATCGACGGCCAGGAGCGCCTGTGCCTCGCGCAGATCTCCAACACGCTGCTGAAGAGCTACAGCTACAACGAGATCCACAACAGGCGCGTGGCACTGGGCATCACTTGCGTGCAGTGCACGCCTGTGCAGCTGGAGATTCTGCGGCGCGCGGGCGCCATGCCGGTGTCGTCGCGCCGCTGCGGCATGATCACGAAGCGCGAGGCCGAGCGCCTGTGCAAGTCGTTCCTGGGCGCGCACTCGCCGCCCAAACTGCCCGAGAACTTCGCCTTTGACGTGTCGCACGAGTGCGCGTTCGGCTGCCGGGGCAGTTTCATCCCTGCGCGCTACAACAGCTCGCGCGCAAAGTGCATCAAGTGCGCGCACTGCGGCATGTACTTCTCGCCCAACAAGTTCATCTTCCACTCGCACCGCGCGCCCGACTCCAAGTACACGCAGCCGGACGCGGCCAACTTCAACTCGTGGCGCAGACACCTCAAACTCAGCGACAAGACCTCGTCGGAGCACGTGTGCCACGCGTGGGAGGACGTTAAGGCCATGTTTAACGGCGGCAGCAGAAAGAGGACGGTACCGTTTGGCGGCTCGGAGTCGCGCTCTCCAATGGGGGCTCTGCGCGCGGgcggaggtggaggtggaggcgCATCCCCGGAGCTCGCGCGTAAAACACCGCGTTGCAGTAGTGGCAGTGGCGGCAGTGGTGCTGACAGTGTTGTCGTGGGCGCGGAGGACGAGCGCGCGATTTCGGGCATACGCGCGCCCTCCTACCCGCTCGTCCCGTTACCTAGCAAAGGCTTCGGTGCACTGCACAAGCTGCACGCGCCTTTCTTCCCGCACCCATACGGAGGCTTCCCCACGTTTGGCGCGTGCCAAAAGAAAGATGGCACCGGGGTTGGAGTAGGCGGCGGTGGCAGTGGCGGAGATGAAAGCCGCGTGACCGACACGCACAAGGTGGCTACAGCGGCTACGGCAGCGGCggctgcagcggcggcagcggctGCGTTCTGGCCGGGTGCCAAGGACGCGGCGCTTTACCCGGCTTTCCCGGTGTTCTGGCCTACGGCGGGCGGCCTGCACGTGCCCGCTTATCCACACCAGGCGCAGGCGCGCCTCAAGGCGCACACCGATCTGGCACCGGAATTGCGTGAGAGCGAGCGAATAGGAGTACCGGTAGGAGCTGGTGGAGGAAGGAGCCCACCGGGAGAGAGTGAACGTGAACGCGAGCGCTGGACCGACGACGACAGGTCAGGAGAGGAAACAAGGTCGCGGGACAGTCACGTGAGCCACGTGTCCGCCTTCAGACCAGTGCTGAGGGACGCGGAGAGCATCGCCAAGCTGTACGGCCACCGAGAGGCGCGCGCCGTCGGACCACCAGCCGGACACCTGTCTCCAGAGCTGGCCAGCTCGAGCTCCAGCTACAGGTCGGTGTCCCCAGATGTGGACAGCGCGGAGGAGCCAGACGTGGACGTAGAATCCAACCGAGCGCCCGAGGACGAGGAGGAGCTGCAGCACAGCCCGCTCAGAGAGCCACACCGACCTGCAGAGGAGGAGCCGCCGCAGGTCCGGAGCGCGAGCAGCCCGGAACCCGAGACCGGAGGATCTACCGAGGAGGAACCGAGGGGCGAGACTGGCCCGGACAGAGATGCACCCGCGTGCGAGGTGTGTGAGAAGGACACGGCGGTGTGTTTGAACCCTGCGCTCGTGCCAGCACCCCCCAGATACCCCCTCAGCCCACCACAAGGTAAACCTGCACCAGGTACAcacatttataggtatatgaagtaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU412572 lncRNA upstream 8227 5521512 ~ 5535585 (+) True G299932
TU412578 lncRNA upstream 19730 5523235 ~ 5524082 (+) True G299938
TU412574 lncRNA upstream 35224 5476060 ~ 5508588 (+) True G299934
TU412563 lncRNA upstream 165725 5370950 ~ 5378087 (+) True G299925
TU412555 lncRNA upstream 287501 5253574 ~ 5256311 (+) True LOC111191166
TU412581 lncRNA downstream 2548 5551093 ~ 5556428 (+) False LOC111191158
TU412586 lncRNA downstream 29518 5578063 ~ 5579332 (+) True G299946
TU412587 lncRNA downstream 29518 5578063 ~ 5579719 (+) False G299946
TU412589 lncRNA downstream 66474 5615019 ~ 5615717 (+) True G299948
TU412781 lncRNA downstream 229592 5778137 ~ 5817187 (+) True G300097
XM_022665228.1 mRNA upstream 10446 5441540 ~ 5533366 (+) True map2k5
XM_022665229.1 mRNA upstream 10446 5441540 ~ 5533366 (+) False map2k5
XM_022665238.1 mRNA upstream 170472 5327517 ~ 5373340 (+) True LOC103027811
XM_022665285.1 mRNA upstream 287741 5254125 ~ 5256071 (+) False LOC111191166
NM_001320206.1 mRNA upstream 338246 5198798 ~ 5205566 (+) True LOC103028443
XM_022665237.1 mRNA downstream 2552 5551097 ~ 5556415 (+) True LOC111191158
XM_022665220.1 mRNA downstream 15714 5564259 ~ 5652806 (+) True LOC103026906
XM_007246967.3 mRNA downstream 111053 5659598 ~ 5660875 (+) True LOC103026610
XM_022665224.1 mRNA downstream 141241 5689786 ~ 5814523 (+) False LOC103042267
XM_022665222.1 mRNA downstream 141241 5689786 ~ 5814523 (+) False LOC103042267
TU412522 other upstream 373704 5168626 ~ 5170108 (+) False G299903
TU412525 other upstream 373704 5168626 ~ 5170108 (+) True G299903
TU412046 other upstream 2907804 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 3339557 2196179 ~ 2204255 (+) False G299477

Expression Profile