RNA id: TU412589


Basic Information

Item Value
RNA id TU412589
length 326
lncRNA type intronic
GC content 0.44
exon number 2
gene id G299948
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5615019 ~ 5615717 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGTAGAGAAGAAGCAATGGAGAGAATGATGAGGTGGAGAAGAAGCAATGGAGAGAATGATGAGGTAGAGAAGAAGCAATGGAGAGAATGATGAGGTAGAGAAGAAGCAATGGAGAGAATGATGAGGTGGAGAAGAAGCAATGGAGAGAATGATGAGGTAGAGAAGAAGCAATGGAGAGAATGATGAGGTAGAGAGGAAGCAATGGAGAGAATGATGAGGTAGAGAGGAAGCAATGGAGAGAATGATGAGGTAGAGAAGAAGCAATGGAGAGAATGATGAGGTAGAGAAGAAGCAATGGAGAGAATGATGAGGTAGAGAAGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412587 lncRNA upstream 35300 5578063 ~ 5579719 (+) False G299946
TU412586 lncRNA upstream 35687 5578063 ~ 5579332 (+) True G299946
TU412581 lncRNA upstream 58591 5551093 ~ 5556428 (+) False LOC111191158
TU412579 lncRNA upstream 66450 5546758 ~ 5548569 (+) False LOC111191164
TU412572 lncRNA upstream 79434 5521512 ~ 5535585 (+) True G299932
TU412781 lncRNA downstream 162420 5778137 ~ 5817187 (+) True G300097
TU412802 lncRNA downstream 203851 5819568 ~ 5819974 (+) True G300111
TU412803 lncRNA downstream 208262 5823979 ~ 5824250 (+) True G300112
XM_022665237.1 mRNA upstream 58604 5551097 ~ 5556415 (+) True LOC111191158
XM_022665277.1 mRNA upstream 66474 5543812 ~ 5548545 (+) True LOC111191164
XM_022665228.1 mRNA upstream 81653 5441540 ~ 5533366 (+) True map2k5
XM_022665229.1 mRNA upstream 81653 5441540 ~ 5533366 (+) False map2k5
XM_022665238.1 mRNA upstream 241679 5327517 ~ 5373340 (+) True LOC103027811
XM_007246967.3 mRNA downstream 43881 5659598 ~ 5660875 (+) True LOC103026610
XM_022665224.1 mRNA downstream 74069 5689786 ~ 5814523 (+) False LOC103042267
XM_022665222.1 mRNA downstream 74069 5689786 ~ 5814523 (+) False LOC103042267
XM_022665223.1 mRNA downstream 145111 5760828 ~ 5814523 (+) True LOC103042267
TU412522 other upstream 444911 5168626 ~ 5170108 (+) False G299903
TU412525 other upstream 444911 5168626 ~ 5170108 (+) True G299903
TU412046 other upstream 2979011 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 3410764 2196179 ~ 2204255 (+) False G299477

Expression Profile