RNA id: TU412781


Basic Information

Item Value
RNA id TU412781
length 1854
lncRNA type sense_over
GC content 0.33
exon number 4
gene id G300097
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5778137 ~ 5817187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGAAAATGTAGTATCGAACACTacacctctggaaaaaattaagagagcacttcagtttctgaatcagtttctctgatttagctatttataggtttatatttgagtaaaattaacattgctgttttataccataaactaccgacaacatttttcccaaattccaaataaaaatatcatttacattgtcattgtcatttacagcatttatttgctgaaatatcaaaaaggATGtgaagctttcagacctcaaataatgcagttttcatgcgtcttggcatgttccccatgttctcctccacaagtctttcacactgcttttggatttgaAGTTTATGctactcctagtgcaaaaattcaagcagttcagcagtTTCAGGTTTAAAGGCTTGTGGTCAAACATcatcttcttgattatattccagaggttttcaatttggtaaaatcaaagaagctcatcattatttttaagtggtctcttattttttttaaaggcataCAAAGTGATTTAATTCTTCTGTTTTcatcaaaaaaagagaaaaagtttagttttatttatagttcTCATCTTAGCATCTTAGCAGCACATGGTTTAATATCTTAGCGAGTGTTTAATGATTATAAATCAGGTGTGCTGCTGATGGACTTGAgctgtttttaaactgttttttgctTGTAGAAACAGGACGTTGGTGAGAGAAATTCAGTTCTTTTTcgtcttctattgtttaacagTGATTAAACCTGAATTAATTtgctgtaattggtctgaaaagCCGTATCAtctagaaaagtttttttttttcttctttctcagtGTTAATCCAGACTATGGGTTTTTTGATTCgaacaaaaatggaaaatgtctaaaataagtCCAAATTAAACAAAGTAGAAATGGTGTAAAAGATCTCTATAAGCTTTAAGCTATAAGGGCAtaaatacatgcaaataaatgaacaaaatttaAATGTGAACACTTTTTGGATTTGAGTCAGTGAGTGTTTATAACGGCTCTAAgagaattgggacacagccctgACGGCTCTGGgagaattgggacacagccctgACCGCAGCCAAGCCTTCAGAGATGCTGCGTCCGCCTCCAGCCCCTTCCAGCTTCCTGTTACCTGGATTATACTGCCCTCTCGTGGTGTGGGTGTGACTTGGCAGGCCAAGTTTTTAAGACTTTAGCTCTTTGTGTTTAGTTTGGCTGTGTAGGAGATGATGTGGTGAGGTGTCGCATTTAAGACTGTTTCTTTAATGCTTCCTAAACTTCCGGATTTTTATCACAGCTTTGTACTACTTTTGATTAATAATCGCCATGTTTATGGTAAAACTCTTCAGCAGGACTGGACTAGAATGGCATGATATCTGTTTAAGGTACAGAACAGtgtagattttaatatttttcagttcattaatgtctctttttttctccctcctgtTTAATATTAGATATCTGgtgttattttagcttttatagcttttaatatgttttagctCCTGTTTTAGCGCCTTTATCACTGAAGTTAAGCTGGCATCTTACTGTAATATGCTGAGTTTATTGGCACATACTCACTGGGCACCTATGCTATGCTAATTGGCTAATAAtgccattaataataataataatttattgcatAAACGGCTACTGATTTCCATATAACATATaactaatattaatttattgtataaaGGCTTTGGTACTCTATTGGGattactacaaaaaaataaatttcattaTAAGTAAATCATAAGTATAAGTATTTCTGCTTTATGGATCTTCTGgtagtttgttttaattgttatataggcttttatcttttttttttcttttttttccttcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412589 lncRNA upstream 162420 5615019 ~ 5615717 (+) True G299948
TU412587 lncRNA upstream 198418 5578063 ~ 5579719 (+) False G299946
TU412586 lncRNA upstream 198805 5578063 ~ 5579332 (+) True G299946
TU412581 lncRNA upstream 221709 5551093 ~ 5556428 (+) False LOC111191158
TU412579 lncRNA upstream 229568 5546758 ~ 5548569 (+) False LOC111191164
TU412802 lncRNA downstream 2381 5819568 ~ 5819974 (+) True G300111
TU412803 lncRNA downstream 6792 5823979 ~ 5824250 (+) True G300112
XM_007246967.3 mRNA upstream 117262 5659598 ~ 5660875 (+) True LOC103026610
XM_022665220.1 mRNA upstream 125331 5564259 ~ 5652806 (+) True LOC103026906
XM_022665237.1 mRNA upstream 221722 5551097 ~ 5556415 (+) True LOC111191158
XM_022665277.1 mRNA upstream 229592 5543812 ~ 5548545 (+) True LOC111191164
XM_022665228.1 mRNA upstream 244771 5441540 ~ 5533366 (+) True map2k5
TU412522 other upstream 608029 5168626 ~ 5170108 (+) False G299903
TU412525 other upstream 608029 5168626 ~ 5170108 (+) True G299903
TU412046 other upstream 3142129 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 3573882 2196179 ~ 2204255 (+) False G299477

Expression Profile