RNA id: TU412802


Basic Information

Item Value
RNA id TU412802
length 407
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G300111
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5819568 ~ 5819974 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgataataaaataaatgtaaatctcTGGTTAATTCTTCATataaacagtaatatttttattaatggtAGGTTGTGCGCGCCGTATACAAATGCAATTTTACTACAAATACAGTTTggtctattaaataaaataatgtaaattaaatttaaacacaattagttagattaactgattattaaaataattattagttgcaGCCTGAcacctacagctctgaaaaaaatgagaccacttaaacttgatgagtttctttgattttaccaaattgaaaccctctgaaatataatcaagaggatgatggatgatcacaagccatcaaacgcCACAcaaatttttgtaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412781 lncRNA upstream 2381 5778137 ~ 5817187 (+) True G300097
TU412589 lncRNA upstream 203851 5615019 ~ 5615717 (+) True G299948
TU412587 lncRNA upstream 239849 5578063 ~ 5579719 (+) False G299946
TU412586 lncRNA upstream 240236 5578063 ~ 5579332 (+) True G299946
TU412581 lncRNA upstream 263140 5551093 ~ 5556428 (+) False LOC111191158
TU412803 lncRNA downstream 4005 5823979 ~ 5824250 (+) True G300112
XM_022665224.1 mRNA upstream 5045 5689786 ~ 5814523 (+) False LOC103042267
XM_022665222.1 mRNA upstream 5045 5689786 ~ 5814523 (+) False LOC103042267
XM_022665223.1 mRNA upstream 5045 5760828 ~ 5814523 (+) True LOC103042267
XM_007246967.3 mRNA upstream 158693 5659598 ~ 5660875 (+) True LOC103026610
XM_022665220.1 mRNA upstream 166762 5564259 ~ 5652806 (+) True LOC103026906
TU412522 other upstream 649460 5168626 ~ 5170108 (+) False G299903
TU412525 other upstream 649460 5168626 ~ 5170108 (+) True G299903
TU412046 other upstream 3183560 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 3615313 2196179 ~ 2204255 (+) False G299477

Expression Profile