RNA id: XM_007246944.3


Basic Information

Item Value
RNA id XM_007246944.3
length 6625
RNA type mRNA
GC content 0.48
exon number 3
gene id tshz3
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 3657859 ~ 3745126 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAAGAAGAttctctcgctcacacacacacacacacacacacacacacacacagacacacactctctcttacacacacacacacacacacacacttacacacaaaagAAGGAGTTAAAGTGCCATTAGtggagcggcagcagcagcagcttcgctttcctcctcctcctcctacgACCAGGCGGCTCCAATCGAGCGCCGATCGCGTCGTTCCTTCGTCGCCGCGCTCTCTGTTGGATTCggactgaaaacacacacacacactcgtagacacactcacacatagacacacactgaGAGACAGTGTGTCCATGTCCATCCCACCTTCAAACCTGTGTGTTTTTACACATTCACAACAAACCGCAAAGCAGTTGGACATCTGATCATCTCTCCTGATCTCTTTGGGATCAATCATTTCTGGATCTCTTGATCGTTTTTTGGacaatatttatgtttatatatattttttctgctattttttattgctttttttatttttttcacatcaaTAAAAGATGGATAGCAGCTTGAGCAGAAGACGGATGCATTGCTTGCCTGTTGCGGCTTCCAGCGCCGAGTGAGACGCGCGTTGAAGGCGGCAGAAGCGGtcgctctcttttttcccttctttctccctctctctcttttttttctatctatctctctccttttttgaaCCCTCAATCCACCCTCTCTATACCACTATATCTCCGGCTATTGGCTCTCTACTGTTCTACCGCTCTAGTggacgaggaggaggagaaaaagaaaagaacagtgacaaaaaaagaagagaagaggagaggaagaagaaggaggacgAGAGGAACAGAGGGAAAGAGCGAAAAAGGAAAAGGAGCGAGCGAACGAACCGCGGAGAGAGGAGGGACGAACCTCCGCACCATCTCAGCCCCCAACCGGGGTGGTCTCCgctccgctctctctctttttgttcccccctctccctctcttttttgtgAGGGGGGGATTTTCTTCATCTTTGCATCTTTGGtgactatatttatttttatatatttttttctggggGGGACAAACTGCTCATCTATGCCAGgcttttgagaaaaaaaacccGACCCCCGGCAGCCCCCCAGTTCAATCCCTCCTTCCCCCTGCCTGCCGAGCCGAGCGGAGCGCAGCGGCTGGCTGGCCGCGTCGTGGCCGAGCTCGGAGTCGACACACGCGGGGAGAGACGCGGGCAGCGGCCGGCGGCGGAGGCAGCAGCGGGGCAGCGGCAGCAGCGGTAGCGGGCAGCGGGCAGCAGCATGCCGCGGAGGAAGCAGCAGGCGCCCCGGCGCTCCGCAGCATATGTTCCTGAGGAGCTAAAAGAAGCTGCCTTGATGGACGAGGACGTGGACGGAGATGATTCAGCGATTGAAGAGGAGCCTGCCATCAAGTACATGTGCCAGGACAAGGACTTCCTCCTCAAAGACCGGCCAGGCTTCCACGACTCGCCGGCCGCGGACCTCTCCAGCCACGAGATGGACAGTGAATCACACCTCAGCGAGTCCAGTGACCGCATGTCAGACTTCGAGAGTGCCTCGGTGAAGAACGAGGAGGACGGCACTGCCAAGGAGCCACTTACGTCACTGTCTTCAAGCGCATCCATGAGGATGACCAACACGACGgcaccacccagcagcgaggAAGCTGCCGCGGCAGGCCCGGACAGCCTGGAGCAGATGAAGGCTATCTACACCAGCTTCCTGACCAATTCCTACTGGTCGTCCCTGAACTTGAACATGACGCAGCCTCCACCCGAAAAACCCCCTCGCAGCcacagcagtagcagcagcagtagcagcagcagcagctgcggAAGTGGAGGCTACGATTGGCACCAGTCGGCCGTGGCCAAGACCTTGCAGCAGGTCacacagaaccagaacagaataCTGCACCCGGCATCTGAGCCAAACCTCTTTAGCACTGTGCAGCTCTACCGGCAAAGCACCAAGCTCTACGGCTCCATCTTCACTGGTGCCAGCAAGTTTCGCTGCAAGGACTGCAGTGCTGCCTACGACACACTGGTTGAGCTGACTGTGCACATGAACGAAACAGGGCACTACAGAGATGATAACCATGAAACAGACAGTGAGGGCACGAAGCGCTGGTCCAAGCCCCGCAAGCGTTCCCTGCTGGAGATGGAAGGCAAGGAGGATGCCCAGAAAGTCCTCAAGTGCATGTACTGTGGCCATTCCTTCGAGTCACTACAGGATCTCAGTGTCCACATGATCAAGACGAAACACTACCAGAAAGTGCCTCTCAAGGAGCCGGTGACACCAGTGGCCGCCAAAATCATTTCTTCAGCTCGCAAAAGAGCCCCCATCGAGCTGGAACTTCCCAGCTCACCGGACTCCAACGGAGGCACCCCCAAACCTTCTCTCTCAGACACCAGTGACCTTCTGCAGAAGACCGCAAAtccctacatcactccaaaTAACCGCTACGGCCATCAGAATGGTGCAAGCTACGCATGGCAGTTCGAATCTCGGAAGTCCCAGATCCTGAAGTGCATGGAGTGCGGCAGTTCCCACGATACCCTTCAGGAGTTAACAGCCCACATGATGGTGACAGGCCACTTCATTAAGGTCACCAACTCCGCCATCAAGAAAGGCAAGCCCATTATGGAGTCGCCTACAACCCCAGCCCCTACCACTATGCCCTCCACAGAGGATAAGATCCAGTCAGTACCACTAGCTGCCACAGCTTTCTCCCCACCTCCACCTGCACCCCCTCCGCCAAGCATATCCCCTGCCATCAGCGCTATGGAAatcaaaaaagaggaaaaagaagaagagtgcACCAAGGAAATCATCATCAACAGCAAAGAGAAGAAAATGACAGATGATGAACCAGAGGAGAAGTTTGACATTTCATCCAAGTATCCCTATTTGACGGAAGAAGACCTGGAAGAAAGCCCTAAAGGTGGATTTGACATCCTAAAGTCACTGGAAAACACTGTCACATCAGCCATCAACAAAGCACAGAACGGCACACCCAGCTGGGGAGGCTACCCCAGCATCCATGCCGCCTACCAGCTACCAAACATCATGAAGCTTTCCTTGCGCAACTCAGGAAAGAGCTCCCCTCTGAAGTACATGTTCTCTGGCGAAGAGATCCTGTCACCAACCAAAAGCCAACCCCTCATCTCCCCTCCAAGCTGCCAGACCTCACCTCTGCCCAAAAATAACTTCCACGCCATGGAGGAACTTGTCAAGAAAGTAACGGAAAAGGTAGCCAAAGTTGAAGAGAAGATGAGGGATCCCGGTGCAAGAGCTTCCCCGCTGAGAAGAACCACGCCGTCCCCATGCAGTAGCGAAGCTGGAGACTCCGCCAGAGGAGAGTCACccaaagagaggagaggagccaAAACGCCAGAGAGCAACGGCTCAGCAAATGTTCACAAGGACTCCAACGGTGAGGCCCTCAATTCTAAAGAGTCTTTAGAGAATGGCACTGACCATGCTGTGAAAACTCCCGTCACCTCCATGTGCAGCAGCACGGCGATTATCACTGACCATCCTCCAGAACAGCCATTCGTCAACCCCTTAAGTGCACTTCAGTCTGTCATGAATGTTCATCTAGGCAAAGCTGCTAAACCTGCCCTCCCATCTCTCGACCCCATGAGCATGCTCTTCAAGATGAGCAACAGTTTGGGAGAGAAGGCGGCCGTAGCCGCCTCCACTCCGGCTCAGACCAAAAAGACGAACGAGCATCTCGACCGCTATTTCTATCACATCAACAATGACCAGCCAATTGACCTGACCAAAGGCAAGAGCGAAAAGAGCAGCTCCATGGGATCAGCCGTACTGTCTTCCTCCACCTCGACTCCTTCTTCAGTGTCGCCCTCCTCAACCATCACCATGGCCAAGGCTTCCTCAGCCGTGGCTTCATTCATGTCCAACTCACCCTTGCGTGAAAACGCCCTGTCCGACATCTCGGACATGCTGCGCAACCTTACGGAAAGCCATGTCTCCAAATCTTCCACACCAACCAGTCTGTCTGAGCGGTCAGATATCGACGGTGCTACACATGAAGAGACAGAGGACATGTCGCCGGCTCAGAAGCGCAAGGGCCGACAGTCCAACTGGAACCCTCAGCATCTGCTTATCCTGCAAGCGCAGTTCGCTTCAAGCCTGCGGCAAACGGGCGACGGCAAGTACATCATGTCCGACCTCAGCCCGCAGGAACGCATGCACATCTCTCGCTTCACCGGCCTCTCGATGACCACCATCAGCCACTGGCTCGCCAACGTCAAGTACCAGTTGAGGAGGACGGGTGGCACCAAGTTCCTGAAGAACCTTGACTCCGGTCATCCCGTCTTCTTCTGCAGTGACTGTGCTTCACAGATACGCTCCCCCTCCACCTACGTCAGCCACCTTGAATCCCACTTGGGCTTCCGGATTAGAGACTTGGCCAAGTTGTCCGGGGAGCAGCTAGCCAGCCAAATCACGCGCCACACTAAGGGACTTTCTGAGAAACTGCTTTCAGCCCAAGCTCACGTCCTGGCGCACTCGCTCTCAAACCCAAACATCACTCCCAGCCCCAGTCCCCATTCCCATTCCCACTCGCACTCGCCCTCCCCTTCCGCAGAAGAAGAGGCCAACGGCACTGCGTACCAGTGTAAACTGTGCAATCGGACTTTCGCTAGCAAGCATGCTGTCAAACTTCACTTGAGCAAGACTCACGGCAAATCCCCCGAGGACCACCTCTTGTTTGTCTGTGAACTCGAGAAACCTTAGCGGTGGTCAAGGACACAAAAAAGACTCAAAGGTTGAAGTGGTCCTCCACTTCCCACTGTTCCTCTTGCTTTCTCCGAAGCCTTCAGACGAACTGATTTcgtttagtaaaaaaaagcaagacCTGAAAACAAAAAGAGACACTGACTGACTAACACAAAGAACTAACTGCACATAGATGCCATTAAACTACTGTCTAGTTTCGGCACATGATGCGCGGAGGGTTTTCCTCCCGGGATAACTCATACTGGTCCAGAGACGTTctgttttttccccctcattTTAGGTCAAATGAACTGAaaatgtagagagagaaaaaaaaacgactttTCTAACTGTGCAGTGTTGAGTGAAGAGGTGCTGTTGTCACTGGTAAAACATGAAGGtatataagataaaaaaatgactttaaatgaaGTTGTATGTATTTGAAAGTTGTGTAAATTTGATTCACCTTTTGTTTTCCTCCTTTCTTTGGCATCGCTGAGATGCAGTAAGCTGCATGCATTGATGAAACGGTTTCGTTCGactcttttccttctttctttcttttttcgtcAATGTGACCTATGTGTGCTGAAGTCAgcagacgaaaaaaaaaaacgaaactaAATTTAACCCTCTGAGTACGCCCAAGCACTTGTACATTATAACAGATCATCGTCAGAAAATAGAGAACATGAAATGATATGATAAAAGTCAGTAAATTGGATCAGTAAATTCAGTAATACCTTATTCGTATTGGAATACTCAATTTACATTGGGTTCTGATTACTTACGAAAACACaaaacatgatatatatatatatacataatacatgaaacattaaataagcaaacaagAAACAAAATAGAGATCAAAGAACGGAACAGAAGATGATACCATACCTGAGGTTCCAACTGTTCGAAGTGGCTTCTGACTGATtctcactgcaaaaaaaaaaacaacaacaaaaaaaacgtgCGAATCCAAACTGCAGTCTTTCAGTTCCTTGAAAATCAGGGGCCTTTATGAATTCAGGTCGTTTaaaaaaggtgtaaaaatgtgtacatATAAAAAATGGTATAAACTAATTTCTGTCTAAATTATgcatcattttatatttttaatttaagagGAGTATGACTATCTACTGGTGCACAATATATGAAGACATTAATGAAATTGTTTTGCACAAtagttttataaatgttatttaatcaGATGAtgtgaaaatgagagaaaaaaaggagaaaaaaaaaataaaacacgaATAACATcctaaacttttattatttccaCCTCGTGCTCAAAGGGTTAAACTTCTTGTACAAGACGATACTTGTTCCATCGTTTCttgaacatttaaaatgttgtacAAAAGATGCTACTTTATAACGCAAGGAGGAGGAATTCCACAGTGTAACCTATTATTTATAAGCACTCTCGGTTGTTGTTTCATATTGTAGAATGCCTTTTTGATTGGTAACTTTTATGTTGTTCTGTCTGATTACTCTCCCATGATTCCGCACTGCagctttatctatttttttgttgtttttttgttctttattccttttttttgtttcatttcatttcatttgggATATGAAAGGTAACTATGGTTACCTTGCCTCCGATTGACACTTCTGCTACATTTTTGGCAGTTAACTTACTGAAATAACTAACAGCTGCCAGTGAATGGAAATctaatgtgtaaaatattggCATGTAAACAGCACAGGCACTGTTATGCATTCTGTGCCgtgattctctttttttttccttgttgtTGACAATGAAGCACCCATTATATGACTTCATATAACCTTTTTTTCTACTGcagcattaaaatgaaaatgttttggggttttttttgcaataa

Function

GO: NA

KEGG:

id description
K09236 TSHZ; teashirt

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412251 lncRNA upstream 100019 3557431 ~ 3557840 (+) True G299700
TU412245 lncRNA upstream 116825 3540335 ~ 3541034 (+) True G299694
TU412236 lncRNA upstream 261779 3395631 ~ 3396080 (+) True G299685
TU412230 lncRNA upstream 297306 3360289 ~ 3360553 (+) True G299679
TU412221 lncRNA upstream 428849 3228619 ~ 3229010 (+) True G299670
TU412312 lncRNA downstream 44138 3789264 ~ 3789471 (+) True G299744
TU412317 lncRNA downstream 113456 3858582 ~ 3858996 (+) True G299749
TU412343 lncRNA downstream 258695 4003821 ~ 4103810 (+) True G299765
TU412344 lncRNA downstream 358269 4103395 ~ 4160582 (+) False G299765
TU412354 lncRNA downstream 382116 4127242 ~ 4203962 (+) True G299774
XM_022665286.1 mRNA upstream 729997 2398717 ~ 2927862 (+) True LOC103025330
XM_007231730.3 mRNA upstream 2076923 1579110 ~ 1580936 (+) True LOC103044644
XM_022665255.1 mRNA upstream 2090781 1562838 ~ 1567078 (+) True LOC103047296
XM_022665256.1 mRNA upstream 2095830 1558494 ~ 1562029 (+) True LOC111188231
XM_022665239.1 mRNA upstream 2154879 1492578 ~ 1502980 (+) True traf6
XM_022665249.1 mRNA downstream 1117070 4862196 ~ 4894687 (+) True LOC103030650
XM_022665204.1 mRNA downstream 1157508 4902634 ~ 5024425 (+) False madd
XM_022665179.1 mRNA downstream 1157509 4902635 ~ 5024834 (+) False madd
XM_022665180.1 mRNA downstream 1157509 4902635 ~ 5024425 (+) False madd
XM_022665185.1 mRNA downstream 1157509 4902635 ~ 5024425 (+) False madd
TU412046 other upstream 1021851 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 1453604 2196179 ~ 2204255 (+) False G299477
TU411947 other upstream 1453604 2196179 ~ 2204255 (+) False G299477
TU411691 other upstream 2091165 1562888 ~ 1566694 (+) False LOC103047296
TU411618 other upstream 2333005 1324420 ~ 1324854 (+) True G299236
TU412522 other downstream 1423500 5168626 ~ 5170108 (+) False G299903
TU412525 other downstream 1423500 5168626 ~ 5170108 (+) True G299903

Expression Profile