RNA id: XM_022665220.1


Basic Information

Item Value
RNA id XM_022665220.1
length 2149
RNA type mRNA
GC content 0.56
exon number 15
gene id LOC103026906
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5564259 ~ 5652806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCGCTGAGGAACTAGAAGATGGCGGAGAGTGCGGAACTGAAGCAAATGGTGATGAGCCTGCGAGTATCGGAGCTGCAGGTTCTCCTGGGTTACGCAGGGAGGAATAAACATGGCCGAAAGCACGAGCTGCTGACCAAAGCGCTGCACCTGCTGAAGGCCGGCTGCAGCCCCGCGGTGCAGATGAAGATTAAGGAGCTGTACAGGCGCCGCTTCCCCACCAAGCTGGTGTCCCCGGCCGAGCTGGCCCTGCCGGGGGTCCACCCTGCTGCCACCTCGCTGCCCGCCGGACTCACCCAGCTGGCCTTCGACGGGCACGGGGCCACACCATCCCCCCTGCTGCCCATCTCGCTCCTCGGACCCAAGCATGAGCTGGGCCTGCCCCACCTGCCCTCCAACCTCCACCCCGTACACCCAGACGTCAAGCTGCAGAGACTACCCTTCTACGACGTGCTGGACGAACTCATCAAACCCACCAGCCTCGCTTCAGACAACAGTCAACGCTTTCAAGAAACGTGTTTCGCTTTCGCATTAACGCCACAGCAAGTCCAGCAGATCAGCGGCTCAATGGACATCTCCGGGACCAAATGTGACTTCACGGTACAAGTACAGTTACGgtTTTGCTTATCAGAAACCAGCTGTCCACAGGAAGACCACTTTCCTCCGAACCTCTGTGTAAAAGTCAACGGGAAGCCATGTAATCTTCCGGGCTACCTTCCTCCTACCAAAAACGGAGTCGAACCAAAGCGTCCCAGCAGACCAATCAACATTACCTCACTGGTCAGACTGTCCACCACCGTCCCCAACACCATCGTTGTGTCTTGGACATCAGAGATTGGAAGGAGTTACTCTATGGCGGTGTATCTGGTGAAGCAGCAAACGTCCACAGCGCTGTTACAGAGACTCCGAGCCAAGGGCATCAGAAACCCAGACCACTCCAGAGCGCTCAtcAAAGAAAAATTAACAGCAGACCCCGACAGTGAAATCGCCACAACCAGTCTACGAGTGTCGTTACTGTGTCCGCTGGGGAAGATGCGGCTGATGATTCCGTGCCGGGCGGTGACGTGTTCACACCTGCAGTGTTTTGACGCCACGCTCTACATCCAGATGAACGAGAAGAAGCCCACCTGGGTGTGTCCCGTCTGTGACAAGAAGGCACCCTATGAACATCTCATCATTGACGGgtTGTTTATGGAGATTCTGAACAGCTGTGTAGACTGTGATGAGATTCAGTTTAAAGAGGATGGCAGTTGGGCCCCCATGAGGTCGAAAAAGGAAGTGCAGGAGGTGTCGGCCTCGTGTAACGGAGTAGACGGCGGCTGTCGGACATCAGTATCCGAGCAGAAATCCAACTCACACACGAACAGCAACAGTAAGAAAGTGGAAGTGATCGATCTGACGCTCGACAGCTCGtcagaggatgaggaggaggaagagccGCCTCAAAAACGAAGCTGCCCCTCGCTGTCGCCCAGCTCCCCACAGATGAATAAAGGAGTACTGAATCTATGTACGCAGCCGTCTCCAGTAAGTCGAACTCCCAGTATGCCTCAAGTGGAGACCAACTACATCCCTCCACCACCCCCACTCATACAGGACTACCGGCACTACTACCCTACTCCCAACGACCTGTCAgATCTgaactttttctcatttttacaaGGAGAGAATCATCAGcaCTATAACATGGTGATGGCGGCGGCCGCCTCGGCGTCGGAAGACCACGACCTCCTCCTGAACCGTTTCCTGCCCTACAGCTCCTCCCAGCTCTTTCTGGACCCGCCCAGCACCCCGGTGAGCAGCGGCGCCGTCCACGCCCCCGTCAACGTCAAccgcagcaacagcagcagctccagcgGCAGCCTGGTGTCGTCCAGCAGCCTGAGAGACGCTCACGGCCTGTCCGCCGTCCAGCGCTCGGCCTCGGACACCGCCAGCGCCATGGCCTCCGCCATCTACGGCTCCATCCCCGACGTTATCTCCTTAGACTGATCCACcacctctcttttcctcttctctcctctcttcttctgttctgttctgttcctgCTGTTCCTCTAACACGACAGAACCAAACCCACTGAACGGTGATGATGAGATCATCAAGACTTTGGCGGGAAAAACAgagatgttgtttttttttctttttt

Function

GO: NA

KEGG:

id description
K04706 PIAS1; E3 SUMO-protein ligase PIAS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412581 lncRNA upstream 7831 5551093 ~ 5556428 (+) False LOC111191158
TU412579 lncRNA upstream 15690 5546758 ~ 5548569 (+) False LOC111191164
TU412572 lncRNA upstream 28674 5521512 ~ 5535585 (+) True G299932
TU412578 lncRNA upstream 40177 5523235 ~ 5524082 (+) True G299938
TU412574 lncRNA upstream 55671 5476060 ~ 5508588 (+) True G299934
TU412781 lncRNA downstream 125331 5778137 ~ 5817187 (+) True G300097
TU412802 lncRNA downstream 166762 5819568 ~ 5819974 (+) True G300111
TU412803 lncRNA downstream 171173 5823979 ~ 5824250 (+) True G300112
XM_022665237.1 mRNA upstream 7844 5551097 ~ 5556415 (+) True LOC111191158
XM_022665277.1 mRNA upstream 15714 5543812 ~ 5548545 (+) True LOC111191164
XM_022665228.1 mRNA upstream 30893 5441540 ~ 5533366 (+) True map2k5
XM_022665229.1 mRNA upstream 30893 5441540 ~ 5533366 (+) False map2k5
XM_022665238.1 mRNA upstream 190919 5327517 ~ 5373340 (+) True LOC103027811
XM_007246967.3 mRNA downstream 6792 5659598 ~ 5660875 (+) True LOC103026610
XM_022665224.1 mRNA downstream 36980 5689786 ~ 5814523 (+) False LOC103042267
XM_022665222.1 mRNA downstream 36980 5689786 ~ 5814523 (+) False LOC103042267
XM_022665223.1 mRNA downstream 108022 5760828 ~ 5814523 (+) True LOC103042267
TU412522 other upstream 394151 5168626 ~ 5170108 (+) False G299903
TU412525 other upstream 394151 5168626 ~ 5170108 (+) True G299903
TU412046 other upstream 2928251 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 3360004 2196179 ~ 2204255 (+) False G299477

Expression Profile