RNA id: XM_022665229.1


Basic Information

Item Value
RNA id XM_022665229.1
length 3212
RNA type mRNA
GC content 0.42
exon number 21
gene id map2k5
representative False

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 5441540 ~ 5533366 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTAGATGCTGCACTCTTCCGGTAAACttgctgtgagtgtgtgttgacaGTTAGCACGTGAGGAAACTTAGCCGGAATTTCGCTAAACTCGGGATTAATTCGTTATAATTCCGCCTCAGGAAAAAATGTCCTAACTACGGCGCCTTAAGCCCACCGGGAGCTGCGGCAATACACCGCGGGGTTTAGGAGCTGCGGGGCCGGGTAGCGAGCGGAGCTAGCCGGTTAGCTACTGTAACTTCAGCCATGAAGAGCTAAACCAGCTTCAGCTATACtctttataacacacacacacacacacacacacactatattagTCTGTTATGCTTTTACTGGTTCTGAGTAACGCCTGCACCATGGACACCGAGGCTATAGTGATCCGGATAAAGACGCCGGTAGGAGACATGGACTCTTCAGTGGACTGCCCCTCACTGCTCAGCTTCAACGACCTGCTGgtcGCAATCAGAGATGTCATGCCAGAGGCGACCATTACAGCATTTGAATATGAAGATGAAGTTGGTGATAGAATTACAGTCCGAAGTGATGAAGAACTCAAAGCCATGCTGTCTTAttactgtaacaCGGTAATGGAGCAGCGCATGAATGGACTCCTGCCAGAGCCGCTGCAGATCTTTCCACGAGCCGGCAAGACTCCCGGGATCCGGAACATCCACGGCCTGAAGgTGAACACCCGGCCCGTGTCGTCCAGCAGCCGTGGACCTTCTGACCCTCTGCCTAACAACAGTTTAAAGAAGTCCTCGGCAGAGCTGAAGAAAATATTGACCAATGGCCAGATAAACGAACAAGACATCCAGTACCAGGAGCAGCTCGGCCATGGAAACGGAGGAACCGTGTACAAagcGTATCATCTCCTGGGGAAGAGGGTTCTGGCAGTAAAGGTCATTCCTCTTGACATCACGGCGGAGCTGCAGAAACAGATCATGTCTGAGCTGGAGATTCTTTACAAGTGTGACTCTCCGTACATCATAACTTTCTACAGCGCTTTCTTCGTGGAGAACAGAATATCAATATGCACTGAGTTTATGGATGGTGGATCCCTGGATGTTTATAGGAGGATTCCGGAACATGTTTTAGGTCGGATCGCTGTGGCAGTGGTGAAAGGACTGACGTATTTGTGGAGCCTGAAGATTTTGCACAGAGatgTGAAGCCCTCCAACATGCTGGTGAACACCCGAGGCCAGGTCAAACTCTGTGACTTTGGAGTCAGCACTCAATTGGTGAACTCCATCGCCAAAACCTACGTTGGAACCAACGCATATATGGCGccGGAGCGGATATCTGGGGAGCAGTACGGTATTCACTCAGATGTATGGAGTGTTGGAATCTCTTTTATGGAGATTCAGAAGAACCAGGGCTCTTTAATGCCTCTCCAGTTATTGCAGTGCATCGTTGATGAGGACCCTCCTGTGTTTCCAGTTGGTCAATTCAGTGATAAATTTGTCAACTTCATAACACAGTGTATGAGAAAACAGCCGAAAGAACGTCCTGCGCCCAATAACCTCATGGACCATCACTTCATCATGCAGTATGACGACGGCAACACGGAGGTAGTATCCATGTGGGTTTGCCGAAGCTTGGAGGACCGCAAATCCCAGCAAGCTCAGGGGCTCATGTGAGGGATCGTGGGAAATGGAGTCCAGTCTCTCACTGAGTCTTTAGGGGGGTGTATTGCCTAAGCTATAACTTGAAGGAGAAAACTCAACTCCACGCACACAGAGCTCACTAACGGACTGTAGAGAACACTGACTCCAATATCCAACAGTCTGTAGCTTCAAatgtttcatatatatattcgTATTATTCCACTTACAGTGAGAACAGCTCAGAACAGCCTGAGCTTTCCACTGTTTAGTCCTGAAACAGTTGTGATTGGTCACTTTTACAGAAGACGTTTTGACGAGCTTGGACACTTGGACACTCTCCTACAGCATATCAGCCTCAGTTTCTTCTGCCTGACGACGTTCTGAAGATGTTTCTCAAGCTAAATTAACCCTGATGGACTGACTGCATTGGCTGAGCACTAACCTGAGCACATAAAGCACTGGTGTGTTTTCTTCTAGAAAAGTGTTAGCatgaagctaatgctaacacagcacattttccttttaataGGTTATTTTGACTTGATGTTAATACAGGACATGCACTTATAAACAGAAATCAATCAACACTGTATCActgtcattttaattttaacaattttaaggCACAAAAACTGAAATTTGATACTTATAAAGGTTTTGATCTTTgctcagaaaaaaactgaattagacATTttgtataaatgatttatattcATTGTGCATTATGCATTATTCAGTTTCACATATGCTAGTGCAGAATTTGGGGATTGATATGTGGAAATGACTAATAATTTGGTGTATAAGTTGCTACAATTTCCAATAATCACTTTGTTTTAGAGCtggtaaaacaaaaatgtaaaactatatatatatatcactaagACATTTTGATGCAACACAATATTTAGCACAATATTCAGCAGTGGCAGATTTCTTAAAAGTGTATCATGcatagggctgggtatcgttttTAAATCTTTGATACCCTTACCCCaaccaataaatatattttttttcaatacctttttctaaattgcaaccaaaaatgctaaaaaaaaaaaaaaaaaaaaagcgacaattattctcacacaacaGATTTATTTAACAACCAACATGAATAATATCATTCTCGTATTGTCACCAAGAGAGAGTACCATactttttggatcttgttggaacaaataaataataaccataattgtggcactttattaagaaaaaatcaacaagtataaatatttttcctgaagcatattactggatgcatttcagtgtttaaGAGTTTGTTTTAAGGAGTATCAACATTACATTGCCAAAATTAAATTGTGTttgtattagtggtgtcaagCATTGAATACaatcaatgaataaaaaatcataaacgAGAGAGCAACAGCACGAGTGCCTGAGAGATTTCAGCACAGTGGCAGTGTGTGGACAATTTGATTGATCTGCACTGATATCCTCAATCTCTTCTTCGTTACCACCCCTTTATGCAGATATTATTAGTTTGTAATTGCCAGCATGTCAtagttaaattagttttttcggTTTTTGGTTGCTGATTCATTCTATATTAGATGTCTgctaagaagttttttttttattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412563 lncRNA upstream 63453 5370950 ~ 5378087 (+) True G299925
TU412555 lncRNA upstream 185229 5253574 ~ 5256311 (+) True LOC111191166
XR_002649359.1 lncRNA upstream 190128 5251022 ~ 5251412 (+) True LOC111191167
TU412551 lncRNA upstream 191928 5249218 ~ 5249612 (+) True G299918
TU412544 lncRNA upstream 193446 5210722 ~ 5248094 (+) True G299912
TU412579 lncRNA downstream 13392 5546758 ~ 5548569 (+) False LOC111191164
TU412581 lncRNA downstream 17727 5551093 ~ 5556428 (+) False LOC111191158
TU412586 lncRNA downstream 44697 5578063 ~ 5579332 (+) True G299946
TU412587 lncRNA downstream 44697 5578063 ~ 5579719 (+) False G299946
TU412589 lncRNA downstream 81653 5615019 ~ 5615717 (+) True G299948
XM_022665238.1 mRNA upstream 68200 5327517 ~ 5373340 (+) True LOC103027811
XM_022665285.1 mRNA upstream 185469 5254125 ~ 5256071 (+) False LOC111191166
NM_001320206.1 mRNA upstream 235974 5198798 ~ 5205566 (+) True LOC103028443
XM_022665253.1 mRNA upstream 274242 5146969 ~ 5167298 (+) True dis3l
XM_022665277.1 mRNA downstream 10446 5543812 ~ 5548545 (+) True LOC111191164
XM_022665237.1 mRNA downstream 17731 5551097 ~ 5556415 (+) True LOC111191158
XM_022665220.1 mRNA downstream 30893 5564259 ~ 5652806 (+) True LOC103026906
XM_007246967.3 mRNA downstream 126232 5659598 ~ 5660875 (+) True LOC103026610
XM_022665224.1 mRNA downstream 156420 5689786 ~ 5814523 (+) False LOC103042267
TU412522 other upstream 271432 5168626 ~ 5170108 (+) False G299903
TU412525 other upstream 271432 5168626 ~ 5170108 (+) True G299903
TU412046 other upstream 2805532 2610379 ~ 2636008 (+) False LOC103025330
TU411938 other upstream 3237285 2196179 ~ 2204255 (+) False G299477

Expression Profile