RNA id: XM_022665235.1


Basic Information

Item Value
RNA id XM_022665235.1
length 1035
RNA type mRNA
GC content 0.57
exon number 3
gene id LOC111191157
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 1337771 ~ 1340796 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATgctatagagtgaacagtattcAGCACACAGCGAATACAGAGTTACTGCATCTTAGAAACTggtgcttgttcttacagcctacaacatgtAGGCCAGACAGGTTTATATGGTCATAAATGTTCTCCTAACCTTAAGTACTGTATCATGTTCATGCTCCTCCATGCCCGCCGCTGCGGTGGGACTGGTTCCCGGGTCAGGAGGGCGTGCCCGTACCCGGAGGTGTTCTGGGACTCGGAGCTGAGGGCGGAGGGCGAGCAGTGGAAGGGCACCGCCGCCTGCGTCGCTATCGGCTTCCTGTTCGCTCTGACTCTGGGATTAATCTACTGGCAGGTGGTGGATCAGCCCCACCTGCACTGGATGGTGCCGGGCCGGTTCTCTGGGCTGTTCTGGGACTCTGGCAGGAGCTCTCTGGTGTTCAGGACGCTCTCTGAGGACAGTCCCGTGCTGGACGTCTCTGTTGGACCCGTTGGAGACGCTGATTCTCATCTGCATTTCTGGGGGAGCCACAGGAACCGGTGCCGGCCCGACTCCAGCAGGTTCTGTACGGAGTGGGAGGGGCAGCTGGCGGTGGGTGTAGGGGTGGAGCTGGATgaggagatggaggtggagtGCTACAATATCAGCTGGACGCCTCTAAACTGCCGTCTTCATATTAAGCACTGTTTCTCTATGGAGAGTGTGTGGTGGTATGGTGGAGGGAGCGTCCGGCCGCAGAGGTGGCCTATAAACCCCGTGAACGTCCCACTGCAACCCTTCACCCCCACCGACTCCACCCACCACCCCTCAGGGTACGGCTCAGTGCTGGAACACCAGCTCTACGGATCATCAGGTGTAGCAGTGCTGCTGTCTCCAGATGTTCTCCTGAATGTTGGTATAGAGAGAGATCATCAGGTCTGTGTTGAGCCTCGGCGAGCTCAGCCTCTGCACTACAGAGTTTGCGTAGGTCACAATCTTAAAGCCGTTCACCAGAAAATAGCTCATGATCGCAGCCACAGCTCACCACAGCTCCCCGACACAACCATCCTaaggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411613 lncRNA upstream 29920 1307614 ~ 1307851 (+) True G299232
TU411610 lncRNA upstream 42699 1294783 ~ 1295072 (+) True G299229
TU411609 lncRNA upstream 94295 1242921 ~ 1243476 (+) True G299228
TU411608 lncRNA upstream 118866 1218474 ~ 1218905 (+) True G299227
TU411606 lncRNA upstream 125728 1211814 ~ 1212043 (+) True G299225
TU411625 lncRNA downstream 4708 1345504 ~ 1362007 (+) True G299242
TU411627 lncRNA downstream 4708 1345504 ~ 1368309 (+) False G299242
TU411628 lncRNA downstream 4708 1345504 ~ 1399995 (+) False G299242
TU411629 lncRNA downstream 5869 1346665 ~ 1348801 (+) True G299243
TU411638 lncRNA downstream 24643 1365439 ~ 1367927 (+) True G299251
XM_022665234.1 mRNA upstream 108582 1226592 ~ 1229189 (+) True LOC111191156
XM_022665233.1 mRNA upstream 386831 865233 ~ 950940 (+) True LOC103023516
XM_022665265.1 mRNA upstream 636354 689257 ~ 701417 (+) True LOC103040103
XM_022665247.1 mRNA upstream 838769 483770 ~ 499002 (+) True LOC111191160
XM_022665230.1 mRNA upstream 1076750 232806 ~ 261021 (+) True LOC103024613
XM_022665236.1 mRNA downstream 43544 1384340 ~ 1413595 (+) True LOC103044962
XM_022665216.1 mRNA downstream 78240 1419036 ~ 1429239 (+) True LOC103021976
XM_022665217.1 mRNA downstream 78240 1419036 ~ 1429239 (+) False LOC103021976
XM_022665239.1 mRNA downstream 151782 1492578 ~ 1502980 (+) True traf6
XM_022665256.1 mRNA downstream 217698 1558494 ~ 1562029 (+) True LOC111188231
TU411618 other upstream 12917 1324420 ~ 1324854 (+) True G299236
TU411607 other upstream 119665 1217809 ~ 1218106 (+) True G299226
TU411377 other upstream 630947 705160 ~ 706824 (+) True G299046
TU411298 other upstream 867151 462414 ~ 470620 (+) True G299000
TU411137 other upstream 1180367 154984 ~ 157404 (+) False prc1
TU411691 other downstream 222092 1562888 ~ 1566694 (+) False LOC103047296
TU411938 other downstream 855383 2196179 ~ 2204255 (+) False G299477
TU411947 other downstream 855383 2196179 ~ 2204255 (+) False G299477
TU412046 other downstream 1269583 2610379 ~ 2636008 (+) False LOC103025330
TU412522 other downstream 3827830 5168626 ~ 5170108 (+) False G299903

Expression Profile