RNA id: TU2554


Basic Information

Item Value
RNA id TU2554
length 1402
lncRNA type sense_over
GC content 0.44
exon number 1
gene id rwdd3
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6408846 ~ 6414794 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcagaaagtgaggaaatgtcctggtttgtaaattaccttcattggaccagagagcagtagacagcgtGACTGTCAGCGTGGAGCCCTCCCTCTCCCCCTTCCGGTGCAGTCTCAcagtaagagcacacacacaacgctCCACCCCAcaaaccacccccccccccaccaggtgtcctggtttacccaaatgaaaatatggtcaccctaaCATACCACCAATGACATGTAAGCCACACACCTTCATATCGTCATATGTTTTACCAATTGTCCTTCACCTGTTGTGTGGAGCTTAGCCACTTTTGCAGTCCATAAGTTATTAtggtaaatttgattaatatttatGGTTAATACAATGTTCCTACTGAGAATCTAAAAAGGATTtagacagacaaaaaaacaagagtgCCAAGCAGTGAATTACAGTGTTTTCTACATTATTTAGCTATTATTTGAAACGCAGAAACTGTAGTGAACCGTTTGTGACTGTTGGTTGATATGAGCATATCTTGTGGCGTTTCACAGGGTTTTAATCTAGGGCCAttgaaactgatgttaatagAAGTGCTGAAGTGTAGTTTACACACAGATTCTAACAGGTAAATCACTAAACACTATCATATGTAATGTTAGGAAAAAATGCAGGTGGAAACTTTATAGTTTTcagtctttaatattttaatgtactgtactgtaaagtgGCAGATTATAAATCACTATAATCTGAACGTCTATTTTGTGGTCtactttcatacataagatgcaccagtttataaggcgcattatgcgacgctagtaaggaacaggggtgttgccatgttttccttctaattcagcaggtcttgccactgggtggtggtggggccatttctttaaaaggcaaacgagtgctggatgttaatctgaaCAGATTTCTTTGCCGAAAActgttatttgggtgagtaaagcgcttctgtttatttccaAGAAGCTTAGAAGCTGAGGAAcggttaatgctgctccagctaaaaactgaactgaaaactaaactgaatctcctgtataatgctgtacttcagcggagtggttttactgctccttaatacctgactggtaaaattcatacccAAGGCACACCGGATAATGAGGCACACTGgcaattttttgggaaaattaaaggattttatgttaccaaaaaatacagtaagcagattttttttctgaggtcATCTAGTGTACCACCGTGGAATGCTTTGAGCACCACCAGTCTTACCtttaccacagtttgagaatcACTGCCACAGAAGTACCAATGCTGGTTtcataaaaaacatacaatttttgtaaaaaggcatttggaaaaaaaaaaaaaacaaacaagctaaATTTGAATTGTGTGTtaagggacattccaggattttggaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2538 lncRNA upstream 62381 6350511 ~ 6351012 (+) True G1902
TU2529 lncRNA upstream 79313 6333189 ~ 6334080 (+) True G1897
TU2504 lncRNA upstream 484696 5928157 ~ 5928697 (+) True G1873
TU2464 lncRNA upstream 627336 5785826 ~ 5786057 (+) True G1837
TU2303 lncRNA upstream 971253 5439217 ~ 5442140 (+) True G1702
TU2555 lncRNA downstream 2529 6417323 ~ 6417565 (+) True G1916
TU2600 lncRNA downstream 74569 6489363 ~ 6517105 (+) True G1941
TU2601 lncRNA downstream 119667 6534461 ~ 6537245 (+) True G1942
TU2604 lncRNA downstream 143602 6558396 ~ 6565619 (+) True G1945
TU2606 lncRNA downstream 203558 6618352 ~ 6618666 (+) True G1947
XM_007238864.3 mRNA upstream 7411 6381793 ~ 6405982 (+) True LOC103031157
XM_015602894.2 mRNA upstream 7411 6381824 ~ 6405982 (+) False LOC103031157
XM_007238863.3 mRNA upstream 7436 6381786 ~ 6405957 (+) False LOC103031157
XM_022677903.1 mRNA upstream 85482 6317305 ~ 6327911 (+) True LOC111194277
XM_022671302.1 mRNA upstream 710311 5681026 ~ 5703082 (+) True pnkp
XM_007238860.3 mRNA downstream 108877 6523671 ~ 6554373 (+) False LOC103030091
XM_007238861.3 mRNA downstream 108877 6523671 ~ 6554373 (+) False LOC103030091
XM_007238801.3 mRNA downstream 532029 6946823 ~ 6961558 (+) True LOC103037029
XM_015602872.2 mRNA downstream 600514 7015308 ~ 7020982 (+) True LOC103041009
XM_007238807.2 mRNA downstream 766988 7181782 ~ 7188573 (+) True LOC103039155
TU2373 other upstream 710210 5700924 ~ 5703183 (+) False pnkp
TU2210 other upstream 1236081 5171375 ~ 5177312 (+) False LOC103026740
trnav-aac other upstream 1665113 4748208 ~ 4748280 (+) True trnav-aac
TU1521 other upstream 2426665 3981824 ~ 3986728 (+) True G1127
TU1480 other upstream 2617442 3795031 ~ 3795951 (+) False kcne4
TU2597 other downstream 98350 6513144 ~ 6554450 (+) True LOC103030091
XR_002651195.1 other downstream 747452 7162246 ~ 7167800 (+) True LOC111194639
TU3040 other downstream 2145272 8560066 ~ 8560478 (+) True G2304
TU3112 other downstream 2317929 8732723 ~ 8734952 (+) True G2358
TU3168 other downstream 2529685 8944479 ~ 8947316 (+) False lyrm9

Expression Profile