RNA id: XM_007238861.3


Basic Information

Item Value
RNA id XM_007238861.3
length 4711
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC103030091
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6513144 ~ 6554450 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCATTTTGCTGCTGCGGTTAGTTGTTTAGCTGCGTGTCGTTGGTGTGTGGATCCGTTATTCgagcaaaaaatctgtttaaaaccGCGGAAAAGGGTGAATTTCCCCCGGCAATGGACGGCATTGCTAGTGATGTTGCAGTTGGTGTAAAGAGAAGCTCAGATGACCTGTTGTCCGGCAGCCTCTATAACAGTCCTAACTCTTCTGTGACCGCGAATGGAAGTGACAGCAAAAAACTGAGGGTGGAGGACAGCATGGACAGCCCCCCTTCCAGAGTTATTCACATCCGCAAACTTCCAAACGAAGTTTCCGAGACAGAGGTCATCGCCCTGGGCCTGCCCTTTGGGAAAGTCACCAATATCCTGATGCTGAAAGGCAAGAATCAGGCGTTCCTGGAGCTCGGGACAGAAGAAGCAGCAGTGACGATGGTGAACTACTACACGGCAGTGACGCCTCAAGTGAGAAACGTCCCCGTTTTCATCCAGTACTCCAACCACAAAGAGCTGAAGACTGACAGTGCTCTCAATCAGcGTGCCCAGGCTGTGCTGCAGGCGGTTTCTGCCGTCCAGGAAGGCGGCTCTCCGAGCTCGGACACGGCGGGAGACAGTATTTTATCACCTGCACCCAGCCCAGTCCTGCGCATCATCATCGACAACATGTTCTACCCGGTCACCCTGGACGTCCTGCAGCAGATCTTCTCCAAATTCGGCACTGTTATGAAGATTATCACATTCACTAAAAACAATCAGTTCCAGGCGCTGCTGCAGTTCAGTGATCCGGTAAACGCCCAGCAGGCCAAACTGTCTTTGGATGGACAGAACATCTATAATTCCTGCTGCACGCTGCGCATTGACTTCTCCAAGCTGGTCAACCTGAACGTTAAATACAACAACGACAAGAGTCGAGACTACACTCGGCCGGAGCTGCCTGCAGGGGACGGACAGCCTCCTGTAGATCCCTCGATGGCAGCTGCTCTCAGCAAAGACTCCACCTCCCTGCTCGgtgcGATTAGTCCTCTCAGTGCTGCGGCtgcagcagcggcggcagctGGCAGGGTGGCGCTGTCAGGACACTCCGGCGGTGGCGGGGTGTTACTGGCCAGCAATCTGAACGATGAGATGGTTACGCCCCAAAGTCTCTTTACCCTCTTCGGTGTGTATGGGGACGTGCAGCGCGTTAAGATCCTCTACAATAAGAAGGACAGTGCTCTCATCCAGATGGCAGATGGAAACCAGGCGCAGTTAGctATGAGCCACCTGAACGGCCAGAAGATGTACGGGAAGATAATACGCGTGACCCTTTCAAAGCACCAGACAGTGCAGCTTCCCAGAGAAGGACTTGATGATCAGGGCCTCACTAAAGACTTCACCAACTCTCCTCTGCACCGCTTTAAGAAGCCAGGCTCCAAGAACTTCCAGAACATCTTCCCTCCTTCAGCCACCCTCCACCTCTCCAACGTCCGtgaCGATGTGACCGAGGAGGACCTGAGACTCCTCTTCTCCAACTCTGGAGGCACAGTAAAAGCATTTAAGTTCTTTCAAGATCGTAAGATGGCTCTGCTGCAGATGTCCACAGTGGAGGAGGCCATCCAGGCCCTGATCGACCTCCACAACTACGACATGGGCAGAGGCCACCGCCTCAGAGTCTCCTTCTCCAAATCCACCATCTGAACATCTGACCATCTGAAGAACATCAGATCATGCTCTGAGCTGCACCCTTCACTCCCCACCCACTGCAGAGCATAGAGTGAAATCCATGTTGTATCAGTCATTCCTGAAGACCATATCACTATATCATTAACACACGGCATAGTGTTCATAGAGTCTCCTCTCTGTACAACCTGCTCCTCCTCGTCATTCGTGCGTCGGGCCAGCTGTTCTCCCCACGACAAAAAGGTGCCTTACGTACACAAAACAGCGTCATCTACTGTTTGTAATTTGCATACTCGTGAACTGGCGGTAGAAGTGTAGGCACGTtacgttcttttttttttctgtgaatgtTCTGTAGGATTTTAAATGTGGTactttttcaggtttttgtTAGTATTGAAGCATTTTAAATGCCCTTTCACACAGAGTCTGACATTTGTTTTGGTACTGTGCATCATAAACGGGGATAGAATCTCTGTTTCTCTAGTAAATGtccactctttctgtttctctgcttccTGTCTGCTTTAAATCTCTTTACTTTTCTCCTCCACACAAGTGCTCATTAGCAAGGGAAGCTAACGTTATGTGTGGTTCAGCTGCATAAGGTCACTGTAAAGAAATCACTGGCATCTATTCTTTAAAGCggcagtctgtaagttttggtgagagtgtgtaattgcactgagcatgctgAAAAGTACTATTAAAATCTGGATCTGCTGTCTTTTATCTTTACAACTTTTTTAAGTTCTAAATCTGTATTTCTTTGGTTTAACGATGCTTAAATCAGTAGATGATGACAGAGTTTGATGTTTTGGTGTTtccatgtttgcagtagctTTTGTATCGGCGccattagcaacaccatggttgctaaggtaacCAACAAAAGCTGTTAAAATCAGATAAAGGTTCTGAGACATACCGGAcaccccgtttttttttttttttttttttttttttttttttatattcagaaTGAATATATGTGGCTTTGCAAGAATGCAAAAAGTAGCAGAATTACATTGGTgcaattttttactttaatattttgccATCTCTCCGACTGTTGCTTTAACTTCCATGTGTTCAGTCTGATTTTACCGCATCCTACATCCTCTGCAGCGTTGCAGTCGGTCAGTTACAGAAACAGATTGAAAGACATTATACGTGCTTGTTTTCAAAGGATTTTTTTCCATCTGAATAAATCTGACTCTGTGTGAAAGggctttaaagcttttttttttttttcttctctcaacCGAGTGCGAAACTTTCGTTAGTTCTGCGTCACTTACGAATGAGTGACATGGTCCGATGAAACGGCCACCTGCCTGGACGTGTTCTGttcatttctgtgtttttggaaGGGCTGTAGTGGATTCTGATTTAGACCTGGCACTTAAAATACAGTTTCAAATTCAATGCTGGATaccctttatacacacacacacacacaattacacaacgTTACACATGCAGCATAGTGTATTATATCCCACTCCCAAACCTTTCTcgcttttgtttggtttgttttttttgggaaGGGAAattgattttcatttttaaagcatGATTTGCTGTGTCTTGGCAGTAGTGAGGACAAGCTTACTGTTGCTGTTGCAAATGTGCGACCAAGGTGTGTTCAGATTCAGCCAAATAGAGActagacaccccttctaatcaGTTTTCAATTACAGCTGCACCTGTTTCTATCACAGATCTGTGAATACTCAAAAACACAACCCGTATAGCTCCTGTAGAGACGCATTGGCAGCAGAATAGGAATCTCTAGGGATGATAGTCATGCCTAATGCAAGGCCTGAGCAAGAAGAGTATAAATGTTGTTGTGTACCTTGGATGGCAGAGCTGGGAATGGCGGCACACCAGAGTTTGTTGTTCCAGTTGTATATTCTTGTTTGAGAATGGTTCACCAATGTTTTACGATTAATCACAACACAGTACATTACCCTTTTTTTAATGTCCCAGGTCATCACTGTTAGCACTGTGTCAGATTAGAATTACCAGTTACCGATTAGCATTACCAGTTACCAGTTAAGCACAATTTATACTTCTTCGTCAAACATTCGCCGTAGCTTACACGCTGCTGTGTAAGCGAACAGCCGCAGCTATGATTGATCTGCCGGCCCTGGCGTTCCCACCTACACATTCCCATCCTTggggtttaaactgcagagcaacACAGAGGTATAAACACGCTCCGCTGCATATTGAACTATTGCTGAATACGCATAGTCTATGCCGTAGGGTcaacgcagaagtataaattggccttttgCACTTAACCAAAGTTTTAAAGTTGACTTAGCTGTGTGCTGGGaagccatcttggattttgaACTTTGTGTTTGTAATGCTTTTCCAACTTTCTAAATAGAAAATCCAACTTTTGGGGGTTTCCTACTTGGAACTTCAGAATTCCCACATCAAACCAATCCAAGTCTTGAGCTCTGGATAAAgtcccccagcattgagctgtggagcagtgaaagatctgtgctctctggaatgatgagGCTCCATCTAACATTGTTAGTAGAATCTGAGTTGAATTTGAGCTGAATCTGAACGCACCTTGTCTCCTAGCTGGGTGTTGTGATGTTCACTGTGACGTGGTCGTTGTGAAGTGTTGCCCTCACGCATAGAAGAACTGTTGGGACCAAAGTTAACGTGCCTTTTGTCTTATTTTTCCTTGCATTGTACAAAACCGTCTCATGTTTGGTCACCTTACCTACAGGGGAAAAATTCTCTTCTCTCAAGTTCTCTTAAAATGTCAGTAGATGTTGCTTGATGTCTCTCGTTGATCTCTTGCTGTGGTCTGGGAAGGGGAGGGTAAATCACTCTGCATTAATGGatttgattaatttaataatttaatttgccGTTCTGTGGTCTGCTTTTTTTGGAACCGCTGGGGTTGAAGGGAGGGGGCGCTGTGTATATTTTCTACATGGGTTAAGTTTTTACATCTTTAGGATAATGTACAATTTCAGTGTAGTTTGGAAGCCACACGATTAAAAGTTCCTTTTCTACCGAG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2600 lncRNA upstream 6566 6489363 ~ 6517105 (+) True G1941
TU2555 lncRNA upstream 106106 6417323 ~ 6417565 (+) True G1916
TU2554 lncRNA upstream 108877 6413393 ~ 6414794 (+) False rwdd3
TU2538 lncRNA upstream 172659 6350511 ~ 6351012 (+) True G1902
TU2529 lncRNA upstream 189591 6333189 ~ 6334080 (+) True G1897
TU2604 lncRNA downstream 4023 6558396 ~ 6565619 (+) True G1945
TU2606 lncRNA downstream 63979 6618352 ~ 6618666 (+) True G1947
TU2623 lncRNA downstream 115200 6669573 ~ 6669802 (+) True G1963
TU2622 lncRNA downstream 147727 6702100 ~ 6706375 (+) True G1962
TU2637 lncRNA downstream 278563 6832936 ~ 6833305 (+) True G1975
XM_007238862.3 mRNA upstream 108945 6408846 ~ 6414726 (+) True rwdd3
XM_007238864.3 mRNA upstream 117689 6381793 ~ 6405982 (+) True LOC103031157
XM_015602894.2 mRNA upstream 117689 6381824 ~ 6405982 (+) False LOC103031157
XM_007238863.3 mRNA upstream 117714 6381786 ~ 6405957 (+) False LOC103031157
XM_022677903.1 mRNA upstream 195760 6317305 ~ 6327911 (+) True LOC111194277
XM_007238801.3 mRNA downstream 392450 6946823 ~ 6961558 (+) True LOC103037029
XM_015602872.2 mRNA downstream 460935 7015308 ~ 7020982 (+) True LOC103041009
XM_007238807.2 mRNA downstream 627409 7181782 ~ 7188573 (+) True LOC103039155
XM_022679483.1 mRNA downstream 627409 7181782 ~ 7188573 (+) False LOC103039155
XM_007238809.2 mRNA downstream 627409 7181782 ~ 7188573 (+) False LOC103039155
TU2373 other upstream 820488 5700924 ~ 5703183 (+) False pnkp
TU2210 other upstream 1346359 5171375 ~ 5177312 (+) False LOC103026740
trnav-aac other upstream 1775391 4748208 ~ 4748280 (+) True trnav-aac
TU1521 other upstream 2536943 3981824 ~ 3986728 (+) True G1127
TU1480 other upstream 2727720 3795031 ~ 3795951 (+) False kcne4
XR_002651195.1 other downstream 607873 7162246 ~ 7167800 (+) True LOC111194639
TU3040 other downstream 2005693 8560066 ~ 8560478 (+) True G2304
TU3112 other downstream 2178350 8732723 ~ 8734952 (+) True G2358
TU3168 other downstream 2390106 8944479 ~ 8947316 (+) False lyrm9
TU3170 other downstream 2390106 8944479 ~ 8957392 (+) True lyrm9

Expression Profile