RNA id: TU3170


Basic Information

Item Value
RNA id TU3170
length 2791
RNA type TUCP
GC content 0.39
exon number 5
gene id lyrm9
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8944461 ~ 8957392 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTGCAGTTCTGTAAACAGAGCCAGTAAGGTCACTCACGCTACGGATCCAAACACACAAACGCAGTCTGATCTGCTGGTCTGAGGTGGTGTGCTGTAACccgatagtgtgtgtgtaagggaaggtcagtgaggtgtgtgtatgggtgtgtgtggtggttagtgtgtgtgtgtgggtgtaaggTGAAGGTGCGGCAGGGTGAGGATGCCCCCCCTGCCCGGAGCTGAGCTGGTGCGGACCCCCCTGCAGCTGTACCGCTACCTGCTGCGCTGCTGCAGACTCCTCCCCTCTGCAGCCATGCAGGACCACTACAGACACGCAGTCAGACAGAGTTTTAATAGTCATACTGATGAGGACGACCCAGAAAGAATACGCATGATCATCCAAAGGGCTATTTCTGATGCTGACTGGATATTAGATAAGtacaagAAACAGAAGTGATTTCCATATCCACAATCCACATATTTGtctttcaagaactttaaactttgatttttttttttgttttattttattgtattcttcttttttttgtacggCAAATCTTTTTAGTTTCACTGTAGTTTTCCATTGAAATCTATCAACTACTCACTTATTTACATCCCACATTCAGTGGATCATGAGAAAGCATGCCATATAGCACATtaaggaagaaaataaaaatagtcatctaaaaatatattaaatatttttcattttaagagattttttttctcctttttttctgagAGACTGCGGTACGGACAGTGTGAAATATATGTAAGTGAAACTACTTCTTCTGCTCGGACCCTTCGCGGACTACGCCCCGCCCTGCGTTCTTCGGGAAAAGGGAAAGAAGCGCACGGCGGGACGGAGGGTCGAGGATGCGCGTCGCGCGACTGGCTTCGGCAATCGCCGCGGCCGGCCTGAAACATGCTTTGGGTTCATACatgcacattcactcacacaatGGTGCACTTGTCTTTTTTAGGGACAAGTTTTGGGAATATATCTCGGTTAGCACGGAATGGCTGTTTGTCACGTATTTGTCACGTATCTAATCTCCTATCCTTCGCTGATATTTCAGTGAAATCACTGCTGTCCTCAGTTCAGTCGTTTcaggtttggctcatttctatACTGTATGGGTTCATAAATAATCAAAACTTCCATATTCCATTCCTTCTATGTTAGCTGATAAGCAGCgactggctttactgctcaGCTCGGTCTCGCCTTATTAAGGTGGCAGCTGAACTTATGTGAGATGATCTCCTCAGGCTTTTAAATGAGATAGCGAATTCCAGTGTGGGCCTGTAGGGATGCTACAGATCTCCACAGACCTCCATAGATTTCTGTAGATCTTCACAGATTTTTATAGATCTACTTTGATCTCTACATGTTTCCATAGATTTCCTTTGATCTCTAGAGATCTCTCTAGATTTCAATAGATCTAAACCTACTGCACTCGTTGTATCCACATTCTGCAGGCCACACCACTCCCGTCCCCCTAAACGACGCCTAAACTAGGGGAGGTGTGGTACACAGGGCCGGCTTGCCCGGCTTTTGTCCCGTTTGTCCCATTCATCTCATTCTTAGGGTCCTGTCAGTTTTAGCCTGGCCACGTTTCTGCGTTACCCTTGAGCAGAAACCGGCCCAAATACTGACAGGACCACCAGCCCAGCATGCCTACTACTCTACCATGTTCAGCAGTCTTACATGTGTGGCCTCGCCATCACCAGTATCTCTGCACTGTCACAAACTACacaaaaatactgatttctgaaactGGATATGAgctcataaaaaaacagaacagaagccGAAGATGaaataagacaaataaaaacagcGAAACCTAAATGAAacgaaaacaaacaaataaacagacagtAAAGCTATAAAATTATTTGACACTAcggctgaaaaaacaaacaaacaaatggaataaattattaataagctGAATCAAGCTGGACACAAATGTGAGTTCTGAGGGCTttgaaagggaaagaaagagagataaagagagataaagatggAGGTGGAGAGTGCCTCGGTTCTTTCTTCCATACAATGTGGAGAGAACCTGCAGGTGTTCTCTCTATCAgtgaacaaataataaaaaacaaaaagagaaaaaaaaagaaaaagaaaaggaagagcctCCTCACTTCCTCACTTCAGGAACGCCAGACACCCTGGCATCtcaacacacacatccacacacaagTCCACGGAGGCCGAGCTTGTCCGGCTGCCCTCGcatctgcgtgtgtgtgtgtatatatatatatttatatctatatatctgtgtatgtgtgtgtgtgtttttgtgtgtgtaggtgtgtatacATATACGATACGTGTGCATGTGCACAgatctctctcttacacacctCGGTACACCTACACACTAGTGGGAATACTTCTACTGTACGTCTTCTACCCCCACCCCGTCCCatcccctccctcccttcccTCCCCCGTGTCCCTCCTCGACCCGATCAGCAGTGGTTGGTTCTCTAGAACTTCATTTTTTAGTTAGTATTACAGTACACACATCAGCAACGTCTGCTAGCGCTAGACTCCAGTGAAATGCTACGCAGGTTTTTGGGGATGCCTGGGCGTCAGTAGTCCGGGGGTGCGCAGGGTGTGTGCGCGCGGAGGGGACCGCCGAAAGGGTAACCACCACCCACTTCATCGTCATCGGCAACATCATCTTCTTCATCGCCGTcttcatcgtcatcatcatcagctaCTCCCACACCAGAGGAGACGGAGGCATCTCAGAGGGTTGCGCTACTGTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3179 lncRNA upstream 61887 8875852 ~ 8882592 (+) True G2400
TU3165 lncRNA upstream 81732 8857353 ~ 8862747 (+) True G2393
TU3120 lncRNA upstream 157469 8743016 ~ 8787010 (+) True G2362
TU3067 lncRNA upstream 313632 8629797 ~ 8630847 (+) False G2328
TU3237 lncRNA downstream 216944 9174336 ~ 9174756 (+) True G2443
TU3247 lncRNA downstream 358292 9315684 ~ 9316134 (+) True G2453
TU3255 lncRNA downstream 428876 9386268 ~ 9394588 (+) True LOC111195023
XR_002651425.1 lncRNA downstream 436578 9393970 ~ 9394580 (+) False LOC111195023
TU3265 lncRNA downstream 441202 9398594 ~ 9399000 (+) True G2464
XM_022671346.1 mRNA upstream 4069 8939639 ~ 8940410 (+) True LOC111192952
XM_022671338.1 mRNA upstream 90278 8846840 ~ 8854201 (+) True LOC103022607
XM_007258003.3 mRNA upstream 105100 8837372 ~ 8839379 (+) True LOC103022922
XM_022680405.1 mRNA upstream 118119 8822490 ~ 8826360 (+) True LOC111194918
XM_022680152.1 mRNA upstream 131259 8811248 ~ 8813220 (+) True LOC103027547
XM_007237177.3 mRNA downstream 196997 9154389 ~ 9156240 (+) True LOC103038411
XM_022681094.1 mRNA downstream 450707 9408099 ~ 9463585 (+) True LOC103045140
XM_007229233.3 mRNA downstream 615128 9572520 ~ 9600832 (+) True LOC103038783
XM_022681181.1 mRNA downstream 615128 9572520 ~ 9600262 (+) False LOC103038783
XM_015604160.2 mRNA downstream 676701 9634093 ~ 9743491 (+) True LOC103039705
TU3112 other upstream 209527 8732723 ~ 8734952 (+) True G2358
TU3040 other upstream 384001 8560066 ~ 8560478 (+) True G2304
XR_002651195.1 other upstream 1776679 7162246 ~ 7167800 (+) True LOC111194639
TU2597 other upstream 2390029 6513144 ~ 6554450 (+) True LOC103030091
TU2373 other upstream 3241296 5700924 ~ 5703183 (+) False pnkp
TU3313 other downstream 674473 9631865 ~ 9670125 (+) True G2509
XR_001518524.2 other downstream 676702 9634094 ~ 9742465 (+) False LOC103039705
TU3788 other downstream 2316606 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 2330739 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 2967058 11924450 ~ 11927250 (+) True G3096

Expression Profile