RNA id: TU3286


Basic Information

Item Value
RNA id TU3286
length 679
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2484
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9490620 ~ 9491298 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGCATAGCTCACGGTTCTACACGCAGCAGTCTGCAGATGTTTTTTTGAATGATTAGGTGCTGTATCTCAAAGAGATTTTTATAAGATTAAGGCAGAGTAATAGATCATTTTTTATAGAGAAGGTGTTGGCAGAAAAGAGCTGGGCAGTGATGTGCTGAGAGTGTACAGAATAGCACCCACTTTTTGAAACAAGCCAAACTTGTGTAGTGAATCTAAATCTTgctattgtgtttgttttttttttttttatatatatattttataaatgctATACAGCAGCACTTTGTTCCTTGCATTGTTAAGTcaggagttttatcagcctgctTGGTGGACATTCTTGCAACTTGAAATTACTTGATTGCAGAAaggtttaattaaaaacatatgtTAACTTAACAGTTTTGTCATTTGTCTTAAATAAGGACACCCAACTTTAGTTAGGTATTCTTAGTATCTAGAACTTTTGGTGTGTGAgaagaactttttaaaagtcTGAAACTCTTAGtatgtaaaactgttttttttattgaagtataaataaatgtgaaattaGTAATTTAAACAAGAAATAATTAGTTGGTTTAACTtttcttaaaaacttaaaatttttaGTTGAGATCTAAACTCAAAAAATCgagtgcagtaagttgccttgaaattttgagttttctcaactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3283 lncRNA upstream 678 9485560 ~ 9489942 (+) True G2481
TU3268 lncRNA upstream 25148 9464096 ~ 9465472 (+) True G2466
TU3265 lncRNA upstream 91620 9398594 ~ 9399000 (+) True G2464
TU3255 lncRNA upstream 96032 9386268 ~ 9394588 (+) True LOC111195023
XR_002651425.1 lncRNA upstream 96040 9393970 ~ 9394580 (+) False LOC111195023
TU3287 lncRNA downstream 82 9491380 ~ 9491632 (+) True G2485
TU3294 lncRNA downstream 14412 9505710 ~ 9505977 (+) True G2491
TU3319 lncRNA downstream 260161 9751459 ~ 9752131 (+) True G2513
TU3353 lncRNA downstream 273787 9765085 ~ 9765945 (+) True G2539
TU3358 lncRNA downstream 280138 9771436 ~ 9772691 (+) True G2543
XM_022681094.1 mRNA upstream 27035 9408099 ~ 9463585 (+) True LOC103045140
XM_007237177.3 mRNA upstream 334380 9154389 ~ 9156240 (+) True LOC103038411
XM_007237174.2 mRNA upstream 543384 8944461 ~ 8947236 (+) False lyrm9
XM_022671346.1 mRNA upstream 550210 8939639 ~ 8940410 (+) True LOC111192952
XM_022671338.1 mRNA upstream 636419 8846840 ~ 8854201 (+) True LOC103022607
XM_007229233.3 mRNA downstream 81222 9572520 ~ 9600832 (+) True LOC103038783
XM_022681181.1 mRNA downstream 81222 9572520 ~ 9600262 (+) False LOC103038783
XM_015604160.2 mRNA downstream 142795 9634093 ~ 9743491 (+) True LOC103039705
XM_007229235.3 mRNA downstream 142796 9634094 ~ 9743491 (+) False LOC103039705
XM_022681592.1 mRNA downstream 142797 9634095 ~ 9743491 (+) False LOC103039705
TU3170 other upstream 533228 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 543304 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 755668 8732723 ~ 8734952 (+) True G2358
TU3040 other upstream 930142 8560066 ~ 8560478 (+) True G2304
XR_002651195.1 other upstream 2322820 7162246 ~ 7167800 (+) True LOC111194639
TU3313 other downstream 140567 9631865 ~ 9670125 (+) True G2509
XR_001518524.2 other downstream 142796 9634094 ~ 9742465 (+) False LOC103039705
TU3788 other downstream 1782700 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 1796833 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 2433152 11924450 ~ 11927250 (+) True G3096

Expression Profile