RNA id: TU3313


Basic Information

Item Value
RNA id TU3313
length 705
RNA type TUCP
GC content 0.41
exon number 2
gene id G2509
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9631865 ~ 9670125 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttgacccaaactaaaattgctgagcagctcggcatcagccagtcttccgtctgcaaagctctcaagaaaaactgcagcaagcgcaccaactgttccggcgtccgaaaaacaacaagcagctgagaaagatcgcagtcagcaaccggttcaagtccacttccgagctcaccgacttgtggaacaagcagaccggcgctgacgtctccagatcaaccacttaccgtcgtctgcgcgaactcggcttcaaatctcgcgttccagcagtaaaaccgatgctgaacaagaaacaaatggagaaacggctgaagtgggccaaagaacacggcgagtggactgctgaagactggcagaaagtggtcttcagtgacgaatcatgcttctgcatctccttcggtgaccaaggtcctcgtgtctggcgtcgtggtggcgaaacctacaaccacgagtgcgtgaaaagatccgtcaagtttccccagagcgttatggtctggggatgcatgtccgctcgaggtgtagggaaactctgcttcctcaagaagactgtcaatgctgccgtatatcaagatgttctggaaacgttcctgattccgactgttgaggaacagttcggcgaagaagacttcatatttcaacaggatcttgcaccggctcatgcggcaaagtcgaccaaagattggttcactaaaaaacagcttgaagttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3294 lncRNA upstream 125888 9505710 ~ 9505977 (+) True G2491
TU3287 lncRNA upstream 140233 9491380 ~ 9491632 (+) True G2485
TU3286 lncRNA upstream 140567 9490620 ~ 9491298 (+) True G2484
TU3283 lncRNA upstream 141923 9485560 ~ 9489942 (+) True G2481
TU3268 lncRNA upstream 166393 9464096 ~ 9465472 (+) True G2466
TU3319 lncRNA downstream 81334 9751459 ~ 9752131 (+) True G2513
TU3353 lncRNA downstream 94960 9765085 ~ 9765945 (+) True G2539
TU3358 lncRNA downstream 101311 9771436 ~ 9772691 (+) True G2543
TU3363 lncRNA downstream 111368 9781493 ~ 9782062 (+) True G2547
TU3371 lncRNA downstream 137085 9807210 ~ 9819840 (+) True G2554
XM_007229233.3 mRNA upstream 31033 9572520 ~ 9600832 (+) True LOC103038783
XM_022681181.1 mRNA upstream 31603 9572520 ~ 9600262 (+) False LOC103038783
XM_022681094.1 mRNA upstream 168280 9408099 ~ 9463585 (+) True LOC103045140
XM_007237177.3 mRNA upstream 475625 9154389 ~ 9156240 (+) True LOC103038411
XM_007237174.2 mRNA upstream 684629 8944461 ~ 8947236 (+) False lyrm9
XM_022671129.1 mRNA downstream 86711 9756836 ~ 9759186 (+) True LOC111192769
XM_007229240.3 mRNA downstream 239427 9909552 ~ 9971315 (+) True LOC103041157
XM_022682063.1 mRNA downstream 321448 9991573 ~ 10006311 (+) False LOC103041662
XM_022682027.1 mRNA downstream 321449 9991574 ~ 10006311 (+) True LOC103041662
XM_007229244.2 mRNA downstream 504156 10174281 ~ 10192344 (+) True LOC103042389
TU3170 other upstream 674473 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 684549 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 896913 8732723 ~ 8734952 (+) True G2358
TU3040 other upstream 1071387 8560066 ~ 8560478 (+) True G2304
XR_002651195.1 other upstream 2464065 7162246 ~ 7167800 (+) True LOC111194639
TU3788 other downstream 1603873 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 1618006 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 2254325 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 3312500 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 5291048 14961173 ~ 14963583 (+) True G3736

Expression Profile