RNA id: TU3729


Basic Information

Item Value
RNA id TU3729
length 217
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G2860
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11070035 ~ 11070944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTCAGACGATTAGGCgcgaagggagagagaggtctGATAGCTGCAGCTAGCTCCAGCTGCCGTCATATTATTAACTCGTGTTTACTGATTCTCCTGCTAGACTGGTGGTGTGCTCAAGCTAGTTTccaagctgagagagagagagagagagagagagtgaggcggAGAGTGAGACGGAGAGTGAAGGAGAGTGAGACGGCCGCATCTGCTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3723 lncRNA upstream 71936 10997768 ~ 10998099 (+) True G2856
TU3721 lncRNA upstream 75226 10994593 ~ 10994809 (+) True G2854
TU3711 lncRNA upstream 177915 10837441 ~ 10892120 (+) True G2844
TU3702 lncRNA upstream 285895 10783804 ~ 10784140 (+) True G2836
TU3694 lncRNA upstream 321510 10747901 ~ 10748525 (+) True G2828
TU3779 lncRNA downstream 90471 11161415 ~ 11161630 (+) True G2896
TU3785 lncRNA downstream 197961 11268905 ~ 11269166 (+) True G2902
TU3790 lncRNA downstream 210312 11281256 ~ 11281961 (+) True G2907
TU3803 lncRNA downstream 241437 11312381 ~ 11312608 (+) True G2918
TU3862 lncRNA downstream 352624 11423568 ~ 11424189 (+) False meox2
XM_007229247.3 mRNA upstream 570674 10486486 ~ 10499361 (+) True LOC103043417
XM_007229246.3 mRNA upstream 570676 10486487 ~ 10499359 (+) False LOC103043417
XM_015604137.2 mRNA upstream 830215 10226770 ~ 10239820 (+) True LOC103043114
XM_007229245.3 mRNA upstream 830215 10226770 ~ 10239820 (+) False LOC103043114
XM_007229244.2 mRNA upstream 877691 10174281 ~ 10192344 (+) True LOC103042389
NM_001320208.1 mRNA downstream 14511 11085455 ~ 11089687 (+) True LOC103042748
XM_007236576.3 mRNA downstream 21213 11092157 ~ 11116667 (+) True unc119
XM_022683375.1 mRNA downstream 186797 11257741 ~ 11258661 (+) True LOC111195540
XM_022671357.1 mRNA downstream 187502 11258446 ~ 11279177 (+) True LOC103029949
XM_015601042.2 mRNA downstream 225625 11296569 ~ 11303882 (+) True ankmy2
XR_001518524.2 other upstream 1327570 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 1399910 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 2112643 8944479 ~ 8957392 (+) True lyrm9
TU3168 other upstream 2122719 8944479 ~ 8947316 (+) False lyrm9
TU3112 other upstream 2335083 8732723 ~ 8734952 (+) True G2358
TU3788 other downstream 203054 11273998 ~ 11279159 (+) False LOC103029949
TU3793 other downstream 217187 11288131 ~ 11288846 (+) True G2910
TU4041 other downstream 853506 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 1911681 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 3890229 14961173 ~ 14963583 (+) True G3736