RNA id: TU3803


Basic Information

Item Value
RNA id TU3803
length 228
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G2918
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11312381 ~ 11312608 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agcagtttagagcagcgtcacggaggcactgctgggattacattataaacaggtcagttagcgcgctgctaacctcaggatgtttataactacggagtttagtggacacaccacggctgcaaggttagactgttgaaggctactggagactattaaaggctattggaggttattgaaagggttattgggggcagaaatcagtaaaggctggttagataagtgattcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3790 lncRNA upstream 30420 11281256 ~ 11281961 (+) True G2907
TU3785 lncRNA upstream 43215 11268905 ~ 11269166 (+) True G2902
TU3779 lncRNA upstream 150751 11161415 ~ 11161630 (+) True G2896
TU3728 lncRNA upstream 241437 11070035 ~ 11070944 (+) True G2860
TU3862 lncRNA downstream 110960 11423568 ~ 11424189 (+) False meox2
TU3881 lncRNA downstream 212037 11524645 ~ 11536611 (+) True G2970
TU3878 lncRNA downstream 262343 11574951 ~ 11612299 (+) True G2969
TU3879 lncRNA downstream 270016 11582624 ~ 11612299 (+) False G2969
TU3890 lncRNA downstream 313990 11626598 ~ 11627779 (+) True G2979
XM_015601042.2 mRNA upstream 8499 11296569 ~ 11303882 (+) True ankmy2
XM_007232333.3 mRNA upstream 8499 11296601 ~ 11303882 (+) False ankmy2
XM_022671357.1 mRNA upstream 33204 11258446 ~ 11279177 (+) True LOC103029949
XM_022683375.1 mRNA upstream 53720 11257741 ~ 11258661 (+) True LOC111195540
XM_007236576.3 mRNA upstream 195714 11092157 ~ 11116667 (+) True unc119
XM_007232335.2 mRNA downstream 2364 11314972 ~ 11319136 (+) True sostdc1
XM_015601044.2 mRNA downstream 7755 11320363 ~ 11364325 (+) False ispd
XM_007232336.3 mRNA downstream 7756 11320364 ~ 11364325 (+) True ispd
XM_007232337.3 mRNA downstream 92935 11405543 ~ 11424451 (+) True meox2
XM_022684128.1 mRNA downstream 119355 11431963 ~ 11495096 (+) True agmo
TU3793 other upstream 23535 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 33222 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 1569916 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 1642256 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 2354989 8944479 ~ 8957392 (+) True lyrm9
TU4041 other downstream 611842 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 1670017 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 3648565 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 3725947 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 3733705 15046313 ~ 15046384 (+) True trnae-uuc_1

Expression Profile