RNA id: TU3892


Basic Information

Item Value
RNA id TU3892
length 337
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC111192815
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11629286 ~ 11630831 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGAGACAAAGTGCAGCAAGAAGATTTATTACAATAAGCACGTATGACAATTATAAATAGCGTAAATATAGTCTTTGGCTAAAGCCCCGTCGAAAGCCCAGGTCTGCAGCGTCTGAATCCTGCAGATCCTGCCGTATAGGTACGGCGGGGGCGGAGCCAATCCCCTGGGCAACCGGCGGGACcgaactggaggcggtggggaaggaggagggcgAAACGACAGTCGgcgtctgcaagcaggggagaacaggtatgagggaggtcttataaggacaggtgggagttggtgattggctgagaaaagtggCGTGATTTCGAGTTTCCCGCTAGAACCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3890 lncRNA upstream 1994 11626598 ~ 11627779 (+) True G2979
TU3878 lncRNA upstream 17474 11574951 ~ 11612299 (+) True G2969
TU3879 lncRNA upstream 17474 11582624 ~ 11612299 (+) False G2969
TU3881 lncRNA upstream 93162 11524645 ~ 11536611 (+) True G2970
TU3862 lncRNA upstream 205584 11423568 ~ 11424189 (+) False meox2
TU3894 lncRNA downstream 67726 11698557 ~ 11711348 (+) True LOC111195845
XR_002651868.1 lncRNA downstream 68265 11699096 ~ 11700127 (+) False LOC111195845
TU3902 lncRNA downstream 74042 11704873 ~ 11706432 (+) True G2985
TU3897 lncRNA downstream 100691 11731522 ~ 11754111 (+) True G2983
TU4042 lncRNA downstream 293619 11924450 ~ 11927250 (+) False G3096
XM_022684232.1 mRNA upstream 19001 11505371 ~ 11610772 (+) False etv1
XM_022684275.1 mRNA upstream 19001 11505371 ~ 11610772 (+) False etv1
XM_022684182.1 mRNA upstream 19001 11505372 ~ 11610772 (+) True etv1
XM_007232338.3 mRNA upstream 19001 11586980 ~ 11610772 (+) False etv1
XM_022684128.1 mRNA upstream 134677 11431963 ~ 11495096 (+) True agmo
XM_022684660.1 mRNA downstream 102098 11732929 ~ 11767714 (+) False vwde
XM_022684517.1 mRNA downstream 102100 11732931 ~ 11767714 (+) True vwde
XM_022684632.1 mRNA downstream 102100 11732931 ~ 11767714 (+) False vwde
XM_022684552.1 mRNA downstream 102100 11732931 ~ 11767714 (+) False vwde
XM_015601045.2 mRNA downstream 102101 11732932 ~ 11767714 (+) False vwde
TU3793 other upstream 340927 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 350614 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 1887308 9634094 ~ 9742465 (+) False LOC103039705
TU3313 other upstream 1959648 9631865 ~ 9670125 (+) True G2509
TU3170 other upstream 2672381 8944479 ~ 8957392 (+) True lyrm9
TU4041 other downstream 293619 11924450 ~ 11927250 (+) True G3096
TU4335 other downstream 1351794 12982625 ~ 12984269 (+) True G3313
TU4998 other downstream 3330342 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 3407724 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 3415482 15046313 ~ 15046384 (+) True trnae-uuc_1

Expression Profile