RNA id: XM_007236808.3


Basic Information

Item Value
RNA id XM_007236808.3
length 3066
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC103035587
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14217807 ~ 14244380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTGCGTGCTTGtggatgtgtatgtgtgtgtgtctgcggtCATACAGACGCGCTGTAGTCTATTTATTCCAAGGTGGATCTGTCGGTGATCGGGGACGAGCCCATCAGCccagctttaaaaacacaacagcgtcTGGGAGAATGGATTTTAGCTTCCGTGATAATAGCGCATGTGGAGCTCCCAAGCCAGGCCAGGACAGCCTGCTGAAGAAAGAGTTTGTTGGAGGTCCAGATGTAAAAGGCTTTGACAACAAAGCTGGAGAGAGGATGGATGGGAAGAGTGAAGGCTTCCCAGGTTCTGGATTCATGTCTGGAATGTCTGCAGGGCAGACTGGGAGCCAGTTTCATGGTTTCCTTGGAGAAAGTCGCCCTGGTGCTCCTGAGAAACAACCTTTTAGCACTGATGTACCAGGATTTACCCAGCCAGCAATGAGCATGAGTGCTAATATACATGCGGGCACGGCCCCTTTCCAGTCATCCAAACCTCCCAGTTTGACAGAACCTCACAAGACCTCTGTGCCGCATGCCAACGAACCACCTAAACCATTCCAGGCACCCAGTAAACCTGCAGACACAAGCCCTCGTATCACTTCGGACAGCACAGCAGAAGTACGGGGAAACCTTTGGACAGGTGAGGACATGCTCTCCACAGAGCTGTCCTGTTCCCCCAACAAGCCAGAGCAGAGTCCCCCTAAGCCTTTTGGGATCCATGGAAgtcaagatgaagatgaagctaCATCAGATGAAGAATCAAATGAGGCAGGCCAGCAGAAAAGGAAGAAGTGTGAGGATATGGACGAGGTGCATGGTCTTTTGGAAAGCCTCCGATCTCCTGAGAAAACCCAATCAAAAAGCACTGACCAAGGTGGATCTTCCCCTCCAAGCCCAGAGGAGGGCTGGAAAAGTGAGATTCGAGAGTGGGGTGGAGGACGTATCCAGGCTAAGAAAAGCAAGAGCAGGAAAAAGCTCCCTGAAGAGTGGGCCAGCTTGACCGATTCTAGCGATTCACCTCCTCCACCTGAACCAAGTTCCTCTACAATCACCGACATGGACATTTgtactgcttctgctgctggcATTGAACAAGGAAGTGCTCCACCTTCTTTCACGCCAGATGCAATATCTCTCACAACCACAATTCAGTCAGTTGCCCCAAGTGTAATCCCACCATCCACAACCCCTGACCCAACCCAGAGCACCCCAGCAATAACTACCTCCTCACATACAACCCCAGATTTCACCTCTGACTTTAAGAATACTGCAGATTCCTTCCCCAGCCCAAAGACCACCACTGCCTCCCAGGACATTTCCACTGTAACTGGCCCCGTCCCCTCCCCACCAGTCACTTCCAGCACTGTACTAGGCCAAAACCCTGCAGCTTCGACTTCCCCCACCTCACTCACAAAGCACCAGGAGCCACTGCTGGCAAACTCCTCCCAACTGCAAGTGAAAGAAGACCTGGCTGCCAAAGAGAAGAATGCGAAGGTGGACACCTCTCCTAAGACAGACAATTCAAGCCTGGTTGGAAAAACAGACAAGCCTGAAAAGACAGAGAAGATTGACACCTCAGTAAAGAAAGTGGAGAATTTGGACAAGAACCAAGAGACAGAGAAGAAGGACCATAAACccgaaaaaaatgagaaagttGAAAAACTGGATAaagctgaaaaaacaaacaatgctgggaaggaggagaagaaaaatgGCAATGAAAAAGTAGACAAGACAACAAAAAATGAGAAGAATGAAAAGGTTGGCAAAGGGACAACCAAACCCACTACGACTAATGGAAGTAAAGAAGTGATCAGCCCTGAGAACAAAACAAAGGAAAAGacaaacaaacaaaattcagCCAAACCAAACTCAAATGCCACTGGAGAAAATGCAGCTTATAAAAAGCCTCCTGTTCCCAAGACAACGACTCAAACCACAGGCAATAAGAAACCTTCTGGCACCAATTCTGCCCGTGAGGCCAAGGCTCCAGAGAACGGTACTCAACTCCCACGGAAGCCTCCTGTACCAAAGTTCCGGAGTTCTTCTGCTAAAACTTCACCGAAGACAACCCCTAACTCCTCCGCGAAAGCACCCAATGCTCCAGCTTCACCAGGCACCAACGGAAGCACTCGCACATCCCGAATCACCAAACCTCCTGTACCCAAGCAGGTTCCTCTAGCAAGGAAACCCCCAGTGCCCCGAGCTCCCCGCAACACTCGGGTCAACAGTGCCCCCCTGCCAGATCTAAAGAACGTGGCCTCCAAGATCGGCTCCACAGACAACATGAAGTACCAGCCTGGTGGAGGAAAGGTTCAGATAGTCCACAAAAAGTTGGATTTCAGTCATGTGACCTCTCGCTGTGGCTCCAAAGACAATATCAAGCACGTCCCAGGAGGAGGGAATGTCCAgatcacaaataaaaaacttgACGTGAGCAAAGTGACTGCAAAGTGTGGCTCCAAggataacattaaaaacaagccTGATGGTGATGATGAGAACACTGGATCACCCAGTAAGAGAGACAAGACCAAGGCCAACGCAGAATCACCGAACAATGTGGGCCATGAACCAGGAGGCAACCAAATTAAGACTGGAGCAGATCAGAAGAAGTCGGATGGAAGCCCACCCGTCCCCGCTCAAGCAGGGGCTAAGGAGAACGGTCTGAAGGACAGCTCCTCTAGTGTTCCCTCTCAGGGAGAGGGGCTCTTGAACTCCCAGGGTCTGGACAAGCGTATCCCTGCAAAAAACTGAGTCTTACAAGCTGAGCTTCCAAGAGGATGCACGAGCTCACACGGACCGTGGCACCAAAATCATCTCCTGGTCCCCCCGAGTGGCAGCCACCTCCCACCCACATTGCAACACCTCTCGCAGTGTTTCTCTGGGGTCCACAGTCTCCCTCGTCTCAATCCAGCCCGTTGCATCTAGTTGCCAGGGAATGGGTTCAAACCAGTACACTAGCAGTACACAAGCTGACCCTTTAAAACCTGCATTCATCTCACCATTACCAAAACAGCTACTTTAACCATTTTCTTTGTTTCCCCAGATACACAGATCAGATCACAAGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4631 lncRNA upstream 48847 14157586 ~ 14168960 (+) True G3515
TU4621 lncRNA upstream 73116 14144201 ~ 14144691 (+) True G3509
TU4619 lncRNA upstream 74904 14141220 ~ 14142903 (+) True G3507
TU4614 lncRNA upstream 86131 14130437 ~ 14131676 (+) True G3502
TU4613 lncRNA upstream 88951 14127362 ~ 14128856 (+) True G3501
TU4658 lncRNA downstream 8571 14247712 ~ 14247978 (+) True G3524
TU4663 lncRNA downstream 10702 14249843 ~ 14255637 (+) True LOC111190024
XR_002648994.1 lncRNA downstream 11582 14250723 ~ 14253827 (+) False LOC111190024
TU4681 lncRNA downstream 73067 14312208 ~ 14382477 (+) False G3537
XR_002649121.1 lncRNA downstream 125324 14364465 ~ 14369107 (+) True LOC111190477
XM_022663491.1 mRNA upstream 4493 14172064 ~ 14213314 (+) False LOC103039353
XM_022663444.1 mRNA upstream 4493 14172064 ~ 14213314 (+) False LOC103039353
XM_015602319.2 mRNA upstream 4493 14174494 ~ 14213314 (+) True LOC103039353
XM_007236916.3 mRNA upstream 4493 14174494 ~ 14213314 (+) False LOC103039353
XM_007260878.2 mRNA upstream 496742 13715172 ~ 13721065 (+) True LOC103043284
XM_022663843.1 mRNA downstream 44480 14283621 ~ 14327119 (+) True ankrd13b
XM_022663897.1 mRNA downstream 44480 14283621 ~ 14327119 (+) False ankrd13b
XM_022663953.1 mRNA downstream 44480 14283621 ~ 14324852 (+) False ankrd13b
XM_007236817.3 mRNA downstream 44481 14283622 ~ 14327119 (+) False ankrd13b
XM_007236818.3 mRNA downstream 44481 14283622 ~ 14327119 (+) False ankrd13b
TU4335 other upstream 1233538 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 2290557 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 2928961 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 2938648 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 4475342 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 722032 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 799414 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 807172 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 833699 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 2303801 16542942 ~ 16545854 (+) True G4221

Expression Profile