RNA id: TU4748


Basic Information

Item Value
RNA id TU4748
length 468
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G3575
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14511140 ~ 14512789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTAAAAGGCCActgcaacaacaacagcagctttaataaatgataaactCTTAAAAAGATTAGATTCTCTTATTGGGGATTTTCCCACCTGTCAAAAGAAGAACACTGACCACCTCCCCTCACTTCTGTCTTCTCATCGTCCAGTGGCTAGGCAGCTGCTTCGGGGAGATGTAGTGAAGACTGGTTTAATACTGAGGGGAGACATCTTCGTCTATTGACCTTTCCACTCAAGCTTTTTTGGGACGCTGATGTCTCAATGGGTCATGCGGTCCATCTCCTCCACAGTGAACCCTGGCCCTCGACAAAACGAGCCTCTGCAAGAAGACTTTGTGCTGGTCCAGCGTCTGGGCCTACAACAAAgtcacatgaaaaaaaagaaaagaaaagagcttCTCAAATCAGCTTCCATACTCAATTTTTATTCCACAGGGAACTGCTGTTGTTGTGACTGTTTGGAAAGGTTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4733 lncRNA upstream 6125 14444558 ~ 14505015 (+) False LOC103039352
TU4679 lncRNA upstream 39388 14380750 ~ 14471752 (+) False G3537
TU4712 lncRNA upstream 75559 14414289 ~ 14435581 (+) False G3561
TU4710 lncRNA upstream 77965 14414289 ~ 14433175 (+) True G3561
TU4676 lncRNA upstream 112297 14380750 ~ 14398843 (+) False G3537
TU4876 lncRNA downstream 80144 14592933 ~ 14594059 (+) True G3648
TU4972 lncRNA downstream 329079 14841868 ~ 14845624 (+) False LOC107197063
TU4973 lncRNA downstream 329079 14841868 ~ 14845624 (+) False LOC107197063
TU5077 lncRNA downstream 521977 15034766 ~ 15035187 (+) True G3787
TU5078 lncRNA downstream 523153 15035942 ~ 15036582 (+) True G3788
XM_007236823.3 mRNA upstream 7791 14446750 ~ 14503349 (+) True LOC103039352
XM_022663843.1 mRNA upstream 184021 14283621 ~ 14327119 (+) True ankrd13b
XM_007236832.3 mRNA downstream 158723 14671512 ~ 14705719 (+) True LOC103041611
XM_007236834.3 mRNA downstream 218318 14731107 ~ 14753636 (+) True clip3
XM_007236835.3 mRNA downstream 218318 14731107 ~ 14753636 (+) False clip3
XM_007236836.3 mRNA downstream 254025 14766814 ~ 14802961 (+) True LOC103042749
XM_007236837.3 mRNA downstream 302765 14815554 ~ 14822099 (+) True LOC103043061
TU4335 other upstream 1526871 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 2583890 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 3222294 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 3231981 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 4768675 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 448384 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 525766 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 533524 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 560051 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 2030153 16542942 ~ 16545854 (+) True G4221

Expression Profile