RNA id: XM_022665613.1


Basic Information

Item Value
RNA id XM_022665613.1
length 1350
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC107197063
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14840293 ~ 14845626 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGATCAAGTTTGCTCAGTGGAGTGGTAGAGCAGGCTTTTGTAGTGAGAGCTGTAGTTAAAACACTTCATCCCCTCCCTTTTTGTCTGCATGTGCTTTTCAACTGGAGATTTAACCATTCCTCTGATCTAACTTGTAGAGCTGTGCCTTCATCTTCACAACCACCATGTTTTTGGCCAAAAAATTCATAGGAGGGATTATCGACGTTGTGAGCAATATTGATCCTAGTCAGTTTGGTTCTTCAGAACCAGTAAGTTTCTGCTACATTGTTTCTCACAATGTTTTTTCAtgttgcttgtttaatatttaagataAGACAGAAAACAGCCTTGGGTTTGGGTGGAGGagttgtagattttttttactgtaaatattatttctgtttGTCCCAGCCTCCTGCCAGAAGACCACTCGTAAACGCCAATGCTGCGCAAAATGAAAGTGCTGAGGAAACGCAGTTTCGCAAAGTTTTTCAGCAGCTTGCTGGAGATGACATGGAAGTGAGTCCTAGTGAGCTGATGAACATTCTCAATAAGATTCTGACCAAACATCAAGACATGAAGACTGATGGTTTCACAATCGAGTCTTGCAGGAGCATGGTGGCAGTAATGGATGGTGATAGCTCTGGAAAGTTGGGCTTTCATGAGTTCAAGTACTTGTGGAACAATATCAAGAAGTGGCAGGGCGTCTATAAGTCACATGATGCTGACTGTTCTGGGACAATTGGGGCTGATGAGTTGCCAGCTGCATTCAGAGCAGCAGGGTTTCCCCTAAATGACCAGCTCTTCAAGATGATCATTCGCAGATACAGTGATGAAAGTGGCAACATGGACTTTGATAACTTCATTGGGTGTCTGGTGCGACTGGATGCAATGTGTCGTGCATTTAAAACGCTGGACAGTGACAACAACGGTACAATCAAAGTCAACATCAAAGAGTGGCTGCAGCTGACGATGTACTCCTAAATCAAGAGGAATCGACCCTGTACAGTTCCGTTTCCCATCTTTACActagattctgtgtttttattaccaAATAAATAGTTCAGATTATGCAGTATCATGTAGCTTTGTGTTTAAGatgtgcttatatatatatgggacTCTCAGTTGTAGGTTAGAGCTGAATTCGAGCAGCAGTAGAACTCTGTGGAGTCATTATATTGAGTCATAATGAAGTTTGCTGCACCTCATTACCACAATACGTTGCACCCTAATTTAATTTGGtaattcagtaatattgtaattaaattaggCCTCACCCAGTAGATTATACTGTTTTGGCACAGACTCTAGTAAACATTCCCATGTCTTGTGTTTTgcaaaaatgtgtaataaaacagTTTACGTCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4876 lncRNA upstream 246234 14592933 ~ 14594059 (+) True G3648
TU4748 lncRNA upstream 327504 14511140 ~ 14512789 (+) True G3575
TU4733 lncRNA upstream 335278 14444558 ~ 14505015 (+) False LOC103039352
TU4712 lncRNA upstream 404712 14414289 ~ 14435581 (+) False G3561
TU4710 lncRNA upstream 407118 14414289 ~ 14433175 (+) True G3561
TU5077 lncRNA downstream 189140 15034766 ~ 15035187 (+) True G3787
TU5078 lncRNA downstream 190316 15035942 ~ 15036582 (+) True G3788
TU5085 lncRNA downstream 223804 15069430 ~ 15069802 (+) True G3794
TU5093 lncRNA downstream 275108 15120734 ~ 15134707 (+) True G3800
TU5131 lncRNA downstream 409831 15255457 ~ 15255899 (+) True G3816
XM_007236837.3 mRNA upstream 18194 14815554 ~ 14822099 (+) True LOC103043061
XM_007236836.3 mRNA upstream 37332 14766814 ~ 14802961 (+) True LOC103042749
XM_007236834.3 mRNA upstream 86657 14731107 ~ 14753636 (+) True clip3
XM_007236835.3 mRNA upstream 86657 14731107 ~ 14753636 (+) False clip3
XM_007236832.3 mRNA upstream 134574 14671512 ~ 14705719 (+) True LOC103041611
XM_007236838.3 mRNA downstream 1557 14847183 ~ 14859409 (+) True LOC103043366
XM_022665774.1 mRNA downstream 1557 14847183 ~ 14859409 (+) False LOC103043366
XM_007236844.3 mRNA downstream 14271 14859897 ~ 14868595 (+) True LOC103044784
XM_007236845.3 mRNA downstream 25108 14870734 ~ 14875477 (+) True LOC103045089
XM_015602301.2 mRNA downstream 29927 14875553 ~ 14880632 (+) True LOC103045400
TU4335 other upstream 1856024 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 2913043 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 3551447 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 3561134 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 5097828 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 115547 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 192929 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 200687 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 227214 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 1697316 16542942 ~ 16545854 (+) True G4221

Expression Profile