RNA id: TU5080


Basic Information

Item Value
RNA id TU5080
length 360
RNA type TUCP
GC content 0.46
exon number 1
gene id G3790
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15038555 ~ 15038914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

catcatgaatgctctaaaataccaggacattttaaaacaaaatctggtggcttctgcccgaaagctgaagatgggtcgtcactgggtctttcagcaagataatgaccctaaacatgtggccaaatctacacagaaatggttcaccgcacacagaatcaagctcctcccatggccatctcagtccccagacctcaaccccattgaaaacctgtggggtgagctgaagaggagagtgcagaggagaggacccaggtcgttggatgatttagagagaatgtgcaaagaggaatggtcaaagatccctctttctgtattctcccatcttgtgaaacattacaggagaagattaggtgctgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5078 lncRNA upstream 1973 15035942 ~ 15036582 (+) True G3788
TU5077 lncRNA upstream 3368 15034766 ~ 15035187 (+) True G3787
TU4972 lncRNA upstream 192931 14841868 ~ 14845624 (+) False LOC107197063
TU4973 lncRNA upstream 192931 14841868 ~ 14845624 (+) False LOC107197063
TU4876 lncRNA upstream 444496 14592933 ~ 14594059 (+) True G3648
TU5085 lncRNA downstream 30516 15069430 ~ 15069802 (+) True G3794
TU5093 lncRNA downstream 81820 15120734 ~ 15134707 (+) True G3800
TU5131 lncRNA downstream 216543 15255457 ~ 15255899 (+) True G3816
TU5140 lncRNA downstream 249680 15288594 ~ 15290389 (+) True G3825
TU5164 lncRNA downstream 335717 15374631 ~ 15375643 (+) True G3840
XM_007236852.3 mRNA upstream 4896 14972989 ~ 15033659 (+) True LOC103047124
XM_007236853.3 mRNA upstream 4896 14972990 ~ 15033659 (+) False LOC103047124
XM_022666639.1 mRNA upstream 4896 14996484 ~ 15033659 (+) False LOC103047124
XM_022666510.1 mRNA upstream 4896 15001475 ~ 15033659 (+) False LOC103047124
XM_022666565.1 mRNA upstream 4896 15002425 ~ 15033659 (+) False LOC103047124
XM_007236858.2 mRNA downstream 12560 15051474 ~ 15066217 (+) True LOC103021895
XM_007236859.2 mRNA downstream 12563 15051477 ~ 15066217 (+) False LOC103021895
XM_022666872.1 mRNA downstream 33926 15072840 ~ 15162956 (+) True LOC103023550
XM_022667039.1 mRNA downstream 33926 15072840 ~ 15162956 (+) False LOC103023550
XM_022667095.1 mRNA downstream 33927 15072841 ~ 15162956 (+) False LOC103023550
TU4998 other upstream 74972 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 2054286 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 3111305 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 3749709 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 3759396 11273998 ~ 11279159 (+) False LOC103029949
trnae-uuc_1 other downstream 7399 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 33926 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 1504028 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 1580132 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 1580132 16619046 ~ 16622740 (+) True G4219

Expression Profile