RNA id: TU5246


Basic Information

Item Value
RNA id TU5246
length 3075
lncRNA type sense_over
GC content 0.38
exon number 7
gene id LOC103040601
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15781638 ~ 15826103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATGGCCGTCTTCACTGGTCTCAGTCAGCATCTGAAGACTCTGACTCCTTGTCAGTGGAGATCAGCTCCTACGTGTTGTTAGCTGTTCTCTCTACAGATAAACTCTCTAATGCTGATTTGGGCTATGGTAACAGGATTGTCAGCTGGCTGGTGAGGCAGCAGAATCCCTATGGAGGCTTCTCCTCCACACAGGACACAGTGGTGGCCCTCCAGGCTCTGGCTCTGTACTCCACCAAAGTGTACAGCCCAGACGGCTTCAGCACAGTAACTGTGCAGTCAGCAGATAAAGAGACTCACAGCTTTGAAGTGAATCAGAACAACAAGTTACTGTACCAGGAGAAATCCCTACAAAATGTTCCTGGAAAATACAGTGTTTCAGTGAATGGCTCTACTTGTGCTTCAGTGCAGCTTGCTCTTTTCTACAATATTCCTACACCAATTGTACCCAGTACACTAAGTGTGAAGGTTGAGGCTGATGCAAACTGCACAAAATCATTTGGATATACGCTGTCTACTGTCTTTACAGTCAAATATGATGGAGCATTAAACTACACTAACATGGTCATAGTAGATATAAAAATCCTCTCAGGATTTACAGCAGATCCCACTTCTcTGAAAAACCACCCACTTGTGGAGCGAGTCGATACGAAAGATGACCATGTGATATTGTATCTAAAAGCGCTCCTAAAGAATATTCCTGTGACCTATCAGCTACATATTAAACAAGTGCTGCCAGTGAAGAACCTCAAACCAGCTGTGATCAAAGTTTATGATTACTACCAACCAAGTGACCAGTCTGAAACCGAGTATTCCTCCCCCTGTGTGTAAACCTTCACACCTGCAGCTGCACAGTGAAAAGACAGAAGGAACTTGGATGTGTATTTTGCTTATCTTATCCTGACTTAAGACTTGTTTGTATGACCTGttataaattacaatataacattaaaccaAGAGTGTGCCTGCACAACATTCCTACACACAAAGCAAACACTGAGCCTGcaatacagtaaatgtacagtagagtacaaATTACCCAAAACAAATTCTATGCAtccaattttattattgcattgcctggtcaaaaaaaagaaataaagtggacaccaaaaaaaaggtcacacactaatTTTGTCATGCAGTCACTGATTcaggcattgttttaataagcttctgcagtgtcacaatatttatttcaatccagtgttgcattaatttttcaccaagatcttgcagcacatcccaaagattcttaatgaagttaaggtctggactctgtggtgaacaatccatgtgtgaacaatccaaatgatgatctcatgctctctgaatcactctttcacaattccagcaccatgaatgctggtattgtcatcttggaatatgcccatggcatcagggaagaaaaaaaataattgatggaataacctggtctatattcagtatattcaggtagtcattctttcagcacatactgttgctgaatctagacctgaccaactgcagcaactccagatcatttgcttagttaaattcaGGTGGCGACacattttttggccaggcagcgTAATTAAACTTTCTATTTTGACCTTTCAggatctgtttgtttgtttttagcagAGCCAGTGTATAGTATGTCTTTAAGGGCCCAGATCCAATtctaaatactgtttttttattctagttaTTGTTGGAAcataactgtaaatatttttatggttaaaatattgatgtaacaaatggcaaaacaacaaTTTCATAACGGGTATTTTAACAGTCGTATCAGAACATAAAACTTGTAATTAAAGGGTTTGAATGTACACTTgtacactttttaaaggagcGAGTTTTATCTCCAGAACTAACCAGTacacctacattctgtaaataaagtcAGATAAAtgaacacagattcacacactgtcctgtagtgatgctctgaggatgttcagtatgtgtCACTTAAAGTTAAAGTGAACGACAGACAGTCAAGTGCGATTGAACCTTTACACAGCTTACACAAGActttaacatttttcatttctgtAGTGTGGGGGTTCTGGAACAAACACAGGGAGAAAATTACTAGACTGTACTTTCCATAGTAAACCCCATCTACAAACGGTGGagaataacaggtgaaaaacagATTATcacaaaacaaatagaaaattagACAggtcaacaaacaaaaaagaaaaaattgcaaaaacagagagagcggacataaaactaattttacaagacaacagaacaaaaacacgtaaaaaggtaagaaaaaaagagatctaaaaaaaaaataatgggttGAGAACTTGAGTACAGGTGAAGTACTCTAAATGtgaaataatgaagaaaaaaaaaagccgtGCTTGGTTGGAGTAAGATCCGTCTGTGAGCAGGACACTGGTCATGTGATTTGGCATCTCTCCAGGGCGAACACTCAAACTGAGCTGTGGTACACTTTTATTGTAGGCCCTGCGTTATGCTCTGTTATGTCAGATTGTGCCTCTGCTGCACAGCCTGTGCTCTACAGTGCTGATGTTAAAGTCTTTCTTTCAGAACCCCGGAGAGCTCCTCTAAACTCTGGCTCAGGGCCGGTTTATTTTTCTCAAATTCCTATTAAATTTTCCAaagttttgtttcagtttttcctcacaatgtaaaatgtttacttaaactattgttttagtttttaaaataatatcaaatcaacatcagtcagtaacagcTGCTGTGAATAATGTATATCCCTTACAACAATACTCCTTTATTATAGCTGCACCTTTATTCacctaaacattaaaaacatgtatagaAGAAGACGGCCATGCATGCCCACGGTTATTCAAGCCTACTCACATATCTTAAGAGTAACTACACTAAcattaataactttacattaatagctgaaatatgctcctctgtaataataaagtacccCAGCCCTGCTTAAAATCCTTAGAAAGGAGATGCAAACATGAATTAGTGAGACATTTGCCTGAAGTTGCTCTCCAGGGAAAAGGTCAGCGACCGTGAGCTTCTTGTAAATAAACAGTCTAATGTTTTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5273 lncRNA upstream 22279 15763244 ~ 15772504 (+) True G3894
XR_002650144.1 lncRNA upstream 130435 15660210 ~ 15664348 (+) True LOC111192856
XR_002649787.1 lncRNA upstream 139462 15639346 ~ 15655321 (+) True LOC111192011
TU5122 lncRNA upstream 175612 15617118 ~ 15619171 (+) True G3808
TU5181 lncRNA upstream 257540 15536490 ~ 15537243 (+) True G3855
TU5297 lncRNA downstream 60011 15886114 ~ 15888367 (+) True G3917
TU5583 lncRNA downstream 330409 16156512 ~ 16157533 (+) True G4120
TU5634 lncRNA downstream 467408 16293511 ~ 16310645 (+) True G4158
TU5635 lncRNA downstream 469145 16295248 ~ 16310645 (+) False G4158
TU5643 lncRNA downstream 485838 16311941 ~ 16312669 (+) True G4164
XM_022668895.1 mRNA upstream 19831 15731479 ~ 15774952 (+) False LOC111192347
XM_022668890.1 mRNA upstream 19831 15770277 ~ 15774952 (+) True LOC111192347
XM_022671384.1 mRNA upstream 32722 15733287 ~ 15762061 (+) True LOC103028185
XM_007236888.3 mRNA upstream 65472 15709480 ~ 15729311 (+) True LOC103029544
XM_022668128.1 mRNA upstream 176996 15211657 ~ 15617787 (+) False LOC103023867
XM_007245999.2 mRNA downstream 64102 15890205 ~ 15892830 (+) True LOC103027482
XM_007245997.3 mRNA downstream 108405 15934508 ~ 15940392 (+) True LOC103026903
XM_022668904.1 mRNA downstream 119625 15945728 ~ 15952683 (+) True LOC103027191
XM_007245993.3 mRNA downstream 181562 16007665 ~ 16069129 (+) True LOC103025893
XM_007245994.3 mRNA downstream 181565 16007668 ~ 16069129 (+) False LOC103025893
XR_002649582.1 other upstream 632509 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 748399 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 755869 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 831200 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 2810514 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 716839 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 792943 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 792943 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 2245861 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2574951 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile