RNA id: TU5273


Basic Information

Item Value
RNA id TU5273
length 1236
lncRNA type sense_over
GC content 0.30
exon number 2
gene id G3894
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15763244 ~ 15772504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATGAATACTAATTATAATTGTTATATTCTAACATATAACATTTTGACAGTAAATGTAGTTCTGTTTGCTAGGTTGTCATATTTAATTAGTATTGTTATTTTACCTATTATATTTGGGGTCTCTTTGAACCCAGGCTGTTTTAGCAgtgtaaaacatataaaataatattagcaTTTTTCACACATTCGTTTTGGATAATGTGAAGGTCACTGTGACATGTATGACATTTTATAATCTTCAAACACAAATTTACAGCCCTTACATAACATAACCATTTTAAAAGCTATTTAAGTAGTCGACAAACAAACATAGCATATGAAATAAACgtaataattcattattttaattaatatataatttaaggtTAAAGTtgctggggtcaaattgaccccaatgATAAAAgattactaaaagtacattttagaaTGACAGGaaagttaaaaatgttattcagcacAAATGTGGATATTATTTATATAGTCCATTTATGttcaatatttaaacataaaattctGAAGGAATGTGTTTAGCCTTTTTGAATTATTACTGTCTTCAAATGTATGCTAATACAGTTtaagccagaaaaaaaaaaaaaacataagatcAAGTATAGCTGTACTAATATATCAGCAAACAACCATCACTAAGATTAGGAGAGCATCTTCAGCAGAGTGTGTAGAGATATTGACCACAGCAATCCTTGAGCTTCATGCATCAGCAGCACAGCGGAAGAACACTGTTTTGGCATTTCTGTAAAAAGAaggacaatttaaaaaaattatcatagTACTGCATTTATTTGTACAGCTTACTTGCACTCTCACATGTTCTTTCCTGAACTTGCCTTGTCGTTTAAATGCTCTGCCTGTATGCATTCAATGGTGGACTCAAGGAGGGCAACTGCTCCCTTACCCCCATggcattagtattattagtgcccttttaaaaagtggcaaaaaagagacaaaatgcCCTTCTGACTGCACTTCTTAAAGTAAAAAGGCATAAAGTGCCCACCAAGGGGAATACGAATAATATATGAATTAGTGTTGAAGTCAAGACTGCTAGAGCTAGagagatttaaataaaaacaaacaaaaaattgaTCTTCCATATTTATCAAAATTACTCTTAATCTGTGTCTCTTAATGAGAAGTCACCAAATGCATCAACTAAATCAAATTCTattaatttttataatatatgttttttaattaatatgtaaaaaaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650144.1 lncRNA upstream 98896 15660210 ~ 15664348 (+) True LOC111192856
XR_002649787.1 lncRNA upstream 107923 15639346 ~ 15655321 (+) True LOC111192011
TU5122 lncRNA upstream 144073 15617118 ~ 15619171 (+) True G3808
TU5181 lncRNA upstream 226001 15536490 ~ 15537243 (+) True G3855
TU5164 lncRNA upstream 387601 15374631 ~ 15375643 (+) True G3840
TU5242 lncRNA downstream 22279 15794783 ~ 15797303 (+) False LOC103040601
TU5246 lncRNA downstream 22279 15794783 ~ 15826103 (+) False LOC103040601
TU5297 lncRNA downstream 113610 15886114 ~ 15888367 (+) True G3917
TU5583 lncRNA downstream 384008 16156512 ~ 16157533 (+) True G4120
TU5634 lncRNA downstream 521007 16293511 ~ 16310645 (+) True G4158
XM_022671384.1 mRNA upstream 1183 15733287 ~ 15762061 (+) True LOC103028185
XM_007236888.3 mRNA upstream 33933 15709480 ~ 15729311 (+) True LOC103029544
XM_022667891.1 mRNA upstream 145457 15211657 ~ 15617787 (+) False LOC103023867
XM_022668835.1 mRNA downstream 9134 15781638 ~ 15797309 (+) True LOC103040601
XM_007245999.2 mRNA downstream 117701 15890205 ~ 15892830 (+) True LOC103027482
XM_007245997.3 mRNA downstream 162004 15934508 ~ 15940392 (+) True LOC103026903
XM_022668904.1 mRNA downstream 173224 15945728 ~ 15952683 (+) True LOC103027191
XM_007245993.3 mRNA downstream 235161 16007665 ~ 16069129 (+) True LOC103025893
XR_002649582.1 other upstream 600970 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 716860 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 724330 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 799661 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 2778975 12982625 ~ 12984269 (+) True G3313
TU5723 other downstream 770438 16542942 ~ 16545854 (+) True G4221
TU5717 other downstream 846542 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 846542 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 2299460 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 2628550 18401054 ~ 18401125 (+) True trnaw-cca

Expression Profile