RNA id: TU5719


Basic Information

Item Value
RNA id TU5719
length 2659
RNA type TUCP
GC content 0.45
exon number 6
gene id G4219
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16619046 ~ 16623069 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACATATAAGgtattttgtaaaatgtttaacttGGGTTAAAATTATCAACCATAACACAcaggattgattgattgttacATGGGGCTTTTTATTTACTCAATTTGTACAACCAAAAAAAGAGTTTAGGTGAAGACAGCATAGTCAGTTTCCCCAGCTATGCGGCGATTTGATCCCAGGATGTTACAGAAAGAACGGGAAAAGAAAGTGACAGTAAAAAGGAGGGAAGAAGGAAAACGTTGTAGGCaacaggaaagagagaaaggataAAAAGGAAGAAGGATGGGGAGCAGGGAGGAGAGTCTCTTGGAAAAGTCGTGCGAGAGCATTTCTCCTGCTTGATGGCGAGGTTTCTCATAAGTACagatacaaaaaatatgtaaaagaaaCACTACTTCCACTTTACTTCTGGGCAGGGATCATGTTGTCGATGGACTCTCCCTTCTCCAGCTTCTTCTCCATCTCAACCATGAGCTTCACACCGTCAACCACAAGCTGCACCTGCTGCACTTCAGAGGAACCCAGACGGTCAGCGTTGGAGATGTCGAACACACCACCGACGGAGGCAGTGTCACGCTTCTGCAGACGCAGTCTGGTCAGGATCTCCTCGAACTTGGCGTGTGTGCTGAGCTTGGGCAGCTTGACGTGTACACCACCACGCAGGCCAGTTCCCAGGTTAGATGGGCAGGTCAGGATGAAGCCAAGATGCTCGTTCCACATGAATCCGTGGTTGTGCTTCTTGAAGGTCTCCTCAATCTCTGCAGGCCAGTGCAGAACCTCTTGAAGACTTCCTTCATGTTGCCACCCAGCTGCATGGAGATGACACGCAGATGGTCCTCCTCgttcacccagaccaggaaggTCTTGTTGTCGTTGTGCCAGATTCCTCTTGCGTCAGGCCAGTCGCGGGCCATGCCAGCGGCCAGCAGCAGAGGAGAGACGGGCTTGTCAAACAGGAAGTGGTCAGCGATCAGCTGCTCCTGCTCCTTGTCGGTCATGTCCTTCAGGGGGTAGTACTTGCCCTTGAACTCACCGTCCAGGACGCTCAGAGCTCGATGGACAGCTTCTCCACAGCTCTGCGCTCGCCACGGCTGTTGTGGGGGGGCAGGGTGAATCCCTTGAGGCTGCGGCCAGTACGCACACGGCTGCTGAGAACGTAGTTGGGGTCAAGATCATCACCaccttcAGGTTCTCCCAGTTCAGATCAGTATGATGCTTGTCAGTGGGCTTGTAGCCACCATGACGGTCAGAGATGACTGGGTCAAGGAGATCCTTGAAGACCTCGTAGGACTCCTCATCACCGGCAACGCAGCCGACAGTCATGATGAAGGGGTGGCCGGGTTGTCCACACCGGTCTGGATAACGTCATCCACAGTGAAGCCACTTGGAGTAGACTTGCCCCTCAGCTTGTTGTAGATGTCCTTGGTCAGTACCTTGGCCATGTGGTTGTTGTGCAGGGACAGGTCTGGGAACTCCTCTTCAAGAGAGAACTTCATTTTGTAGTCGTTGTGGCAATTCTTAGTCATGATTGCACCTTTTAGATGATCTGTTGAGGAACATACAGTCAGGAGAGAGTGTAGCTGTTATGGTTTGTTTCTCAGCAACACAGGCAACAAATGAATGAAGTACTACTCTgtatgtactgtttttgttcacaTGGCTTAAGCATAGTcatacactatatattttttcctataGAAAACCCCCATTTACAAATGTTGTGTAGTCGAATACAAAGTCTAATTCCTGTCTGGGAAACGGCCCCTTTGAGTAATTCTGGATACTAAGCTAGTTTTCTGACTTTAGCTAAATGCTAACAGTAGCTCAGGGCTATTACTAGCACAAATCACAAGTGAACAGCCTAAGTCTTGTAGTTGTCCTGTACTGACTTATCTTGCTAACTGTAACCAGCGCTTCATATTCCCACATACAGTGGTGGGGGCATAACCTGCATGCTCAAATGTATCAGACTTCAGCAGATATTTTTAGCATGCCTGCTTTTAGCAAACCCTCACTCCAGATAGCAAATGCAGCTCTCTTGTTTCCAatggggtggtgtgtgtgtgtgtgcatgtccaCACCAAAGTTAGAACTGCATATCAAAGTTCATGAGAGCaagatattattttaatgtaagccttttttgttttaatatattttttagtataatTGCATAGAATACGTTTAAGGGAAATCACAAATCTATGCAACATTATCTATGAGACATTAGTCTGCACACACTTTGCTCGATGCTGCTACATGTATTAGGTTTCGAAAAGGGATCCAATCCTTGAGACACTTTTAAACCAAACCCTAAATCAGTCTTGCCAGTTTGCCCTTTTGCCACAACAGCTGACCTTGCACAACAGGTGTGGCATGCACAGCTAATTTCAGCCTCCAACAGAAAGATCACTATGTGCAGTTCTCAGATTTTCGTATTGAATTAAATGATTTTGTCTAAATTAGTACAATTATGTGCACTTAAATTTTTGAATCCTCGCAACATTTTGcctattttccatttttgtgtAAGACAAATAGTCTAGCACCAGCTTTAGCAGTACACAACTGGACATTTTTATAAATTCCATGAGTGAGAAAAATCAAGAAGGCTTTACAAAATGGCATCGAGTCCATATTAATGATATATGagccatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5707 lncRNA upstream 138394 16480335 ~ 16480652 (+) True G4214
XR_002649856.1 lncRNA upstream 252357 16356282 ~ 16366689 (+) True LOC111192355
TU5658 lncRNA upstream 254029 16356675 ~ 16365017 (+) False LOC111192355
XR_002649857.1 lncRNA upstream 268495 16349607 ~ 16350551 (+) True LOC111192356
TU5647 lncRNA upstream 304109 16314112 ~ 16314937 (+) True G4167
TU5801 lncRNA downstream 56665 16679405 ~ 16681219 (+) True G4277
TU5862 lncRNA downstream 522181 17144921 ~ 17145205 (+) True G4331
TU5865 lncRNA downstream 532020 17154760 ~ 17155096 (+) True G4334
TU5868 lncRNA downstream 534904 17157644 ~ 17157851 (+) True G4337
TU5877 lncRNA downstream 566292 17189032 ~ 17189246 (+) True G4346
XM_007245965.3 mRNA upstream 1116 16561486 ~ 16617930 (+) True mark4
XM_007245966.3 mRNA upstream 1116 16561487 ~ 16617930 (+) False mark4
XM_007245967.3 mRNA upstream 1116 16561487 ~ 16617930 (+) False mark4
XM_007245968.3 mRNA upstream 5182 16561487 ~ 16613864 (+) False mark4
XM_015604947.2 mRNA upstream 5248 16561487 ~ 16613798 (+) False mark4
XM_007245963.3 mRNA downstream 10583 16633323 ~ 16643820 (+) True LOC103044410
XM_007245962.3 mRNA downstream 10583 16633323 ~ 16643820 (+) False LOC103044410
XM_022671138.1 mRNA downstream 66494 16689234 ~ 16691759 (+) True LOC111192859
XM_022669057.1 mRNA downstream 831610 17454350 ~ 17873816 (+) False lsamp
XM_022669050.1 mRNA downstream 831612 17454352 ~ 17873816 (+) True lsamp
TU5723 other upstream 73192 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 1456772 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 1572662 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 1580132 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 1655463 14961173 ~ 14963583 (+) True G3736
TU6119 other downstream 1449224 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 1778314 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 1780965 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 2136635 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 2136635 18759375 ~ 18759858 (+) False G4612

Expression Profile