RNA id: TU5723


Basic Information

Item Value
RNA id TU5723
length 2913
RNA type TUCP
GC content 0.42
exon number 1
gene id G4221
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16542942 ~ 16545854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGTTCATCAATACAATTCATACTCCTGTTTTCTAAATACTACAAGAAAAATCACACGTCTAAGAATATATGCACTAACATTTTCTGTAATTCATGCACTATGTGACATCTGCCTGGCACATCAAACACTCTCACTCATCAATTTAAAACGAAATAAAAACATAGGTGCTGTATTATGTGTAAAGGCCTATTCTGAAGAAGAGAAGCAATGCGCTACAGCACTGAGCAAACACAAATCACGGCTGCAGCAGAGCAACCTCACAACACATAAGCATTCAAGATAGAGATTATAATAATTGTTAGAATTTGCATTTGTGGCGTACATATAAAGAAACAGGCAACGCTGCCACAGCGCAGAGGTGACAAGAAAGACTTCTTGAGGTCTCGATTAGCAAGGCATCCAGAGGTGGCCGAGCATTTTGGGTTATCCTTCACCAAATGGATATTCTTACTGATCCATCTTCTCACATACATGCTAGACACATTGAAACAGTCCCACGGGTTTTCACTGAGATATATGGCTCTCAGGGATGTCAAAGCCTCAAAAGTCCCGTTACTAAGTGATCGCAGTCTGTTGGATTTGAGATGTAGTTGTTCCAGGTTCTTCAGGCTGTGGAATTGTTTGTTGGCTAGATGGTGGAGGTGGTTATTCTCCAGATCAAGCTGTTTCAAGGAGTTCAGTTTGTAGAACACATTCAGGGGCAGATGGGATAGATAGTTGTTCTGCAGGAAGAGTTTCTGAAGGTTTCCCTGAGAGCTGAATATGCTGTGTGGTAATGCCTTGAGCTTATTGAAACTCAGGTGTATTTCTCTCAGTGTGGTGAGGTGTTTAAAATCCTCAGAGGACAAGGTGTTCAAATTATTGTTTGACAAGTCAAGTGTTCTCAAGTTCGGAAGTGTGAAAAATTCAACTGGGAGGCTTTCTATTCGGTTTCGGTTCAGTGACAGTTCCCGTAGGTCATCAAGACCAGCCAGGAGTTCTTTGTGGAGATCGGAAAGGTGATTATCATTGAGTCTAAGAGCTCTAAGCATCTTAAGGCTTTTGAAGGACAGTTTTGGTATATTGTGGATATGATTATTCGTCAGTTGCAGCTCTTTGAGGTGCCGTGTTGTTTGGAAAAGGTACTTGGGAATTCTGGAAAGAGCATTGTTATTTAAGTAAAGGCTATGCAgatgtttaagatttttaaataaagatgcaTTGAGCTGTAAGATGTTGTTGTTGTCCAATTGTAAATCCCTAAGTTCTGTAAGCGGATTAAATGTTTCTGGGAAGATAACAGAAATATTATTGCTATCTAGCTGCAACACTTTTAATTGGGTTAAATTGTTGAACAGGCGTTCAGGAATTGTGTCCAGTTCATTGTTGTACAAATTAAGGTTCTTAAGTTTACCTAGGTCCTGAAAGACACATGAGGGTAGATCTTGCAACTGGTTGAAACTTAAGTCTAGTTCAGCAAGCATGAAGAGACCCCTCAAAGAATCTTCATCTAGGATTTCAAGGGGATTGTTGCTCAAGTCCAGTTTCTTCAGGCCAGCTAGCCCAGAGAATGCATTTTCAGGAACAGAGCTGATAGCGTTTTTCTGCAAGAAAAGGCGGTTGAGGCGGGGTATCTCCTTAAAGGCTTCCGTGGGTACAGCTGTGAGCATATTTTTACTGAGATCAAGGTGAGCTAGTTTCCGTGTACCCTTGAAAAGGCCACTAGAAATGTTTGTCAGTTGGTTATTGCTAAGATCGATGTGAACTAGCCTTCTCAGTGTTCTAAATGTTGATGAATTCAGCTCTGAGATTAAATTACTGTCCATATGTAGATGCTTAAGCTTTGAAAGTGGATGAAATAGATCTGGTGGGATGATATGAATCTTGTTTTTGTCAAGCTGCAGTTCTTGCAACAAGGTTAAATTGTTGAACAGGCCTTGAGGGAGGGATGTCAAGGCAATGTCGAATAGACAGAGGTGCTTTAGTTTGCCTACGTCTTGAAACACTGATGGTGGTAAAACCTGCAATTTACTGGAGCTCAAATCTAAATCATGAAGCTTACGAAGACCTCGTAAGGCGGCCGCATGTATAACTTTAAGAGGGTTGTTGTTCAGATTCAACATTTGTAATGAAGACAGGCTGTAGAAAGCATTTTCCGGAACACGGGTGATCCCATTTTGATGTAGATAGAGGCTGGTGAGATTGGGGGTATCTTTGAGGGTGCCAGTGGGCACAGTGCTGAGCCTGTTTTTACTGAGATCCAGATGACGCAGGCCATGTAGGCCTAGGAAGGTCCCTTCCTCTACACTGCTCAAGTTGTTGTTGGACAGGACGAGTTTGTTTAGATATGTGCAGTTCTCAAAAACACCCTTTTCTATTATCTTTATATGATTCTTGTTCAGGTGGATCTCCTCAAGATCAGATCCTCCCTCAAATGCACCATATGAAAGGCTGAGTATCTCATTCAAGCTCAAAACGAGGATCTTAAGGTTGGTCAAACCTTGAAGGAACTTCTGAGGAAGAATCTTAATGTTGTTTTCACTGAGATCTAATAGGGTGAGATTAGTCAGTTCCTGAAATTTTCCAGTTTTCAAACTGCTAATTCCATTTCCTCTTAAAAACAGTTCTGTAAGGCTACTCATATTTGGTAAGGTGGTGGTACCAGTGAGCCATTCACTGAGCCGGTTGTTGGTGAGATCAAGGACCAGAAGTTCCTCCAGACCTTCTCTGGGTAGAGCTCGGATCAAGTTGTGGGTCACATAGAGGTTCTTTGTGCCTGGTGGAAGTTGAGGAAACTCCAAAAGGTTCTTGTTTGAGCAAGTGATGATGGTCGCATTGTCCACACACTTGCATGACTTAATACAagctccagctgctgctgtgaGGGTCATTACCACACTCAGAAGCCCAAGCATGGTTCCACACTTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5707 lncRNA upstream 62290 16480335 ~ 16480652 (+) True G4214
XR_002649856.1 lncRNA upstream 176253 16356282 ~ 16366689 (+) True LOC111192355
TU5658 lncRNA upstream 177925 16356675 ~ 16365017 (+) False LOC111192355
XR_002649857.1 lncRNA upstream 192391 16349607 ~ 16350551 (+) True LOC111192356
TU5647 lncRNA upstream 228005 16314112 ~ 16314937 (+) True G4167
TU5801 lncRNA downstream 133551 16679405 ~ 16681219 (+) True G4277
TU5862 lncRNA downstream 599067 17144921 ~ 17145205 (+) True G4331
TU5865 lncRNA downstream 608906 17154760 ~ 17155096 (+) True G4334
TU5868 lncRNA downstream 611790 17157644 ~ 17157851 (+) True G4337
TU5877 lncRNA downstream 643178 17189032 ~ 17189246 (+) True G4346
XM_015604962.2 mRNA upstream 499 16538471 ~ 16542443 (+) True LOC107197545
XM_015604961.2 mRNA upstream 6419 16531349 ~ 16536523 (+) True LOC103030966
XM_022668852.1 mRNA upstream 6419 16533090 ~ 16536523 (+) False LOC103030966
XM_007245974.3 mRNA upstream 12700 16482196 ~ 16530242 (+) False exoc3l2
XM_007245973.3 mRNA upstream 12700 16491059 ~ 16530242 (+) True exoc3l2
XM_007245965.3 mRNA downstream 15632 16561486 ~ 16617930 (+) True mark4
XM_007245966.3 mRNA downstream 15633 16561487 ~ 16617930 (+) False mark4
XM_007245967.3 mRNA downstream 15633 16561487 ~ 16617930 (+) False mark4
XM_007245968.3 mRNA downstream 15633 16561487 ~ 16613864 (+) False mark4
XM_015604947.2 mRNA downstream 15633 16561487 ~ 16613798 (+) False mark4
XR_002649582.1 other upstream 1380668 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 1496558 15046313 ~ 15046384 (+) True trnae-uuc_1
TU5080 other upstream 1504028 15038555 ~ 15038914 (+) True G3790
TU4998 other upstream 1579359 14961173 ~ 14963583 (+) True G3736
TU4335 other upstream 3558673 12982625 ~ 12984269 (+) True G3313
TU5717 other downstream 73192 16619046 ~ 16623069 (+) False G4219
TU5719 other downstream 73192 16619046 ~ 16622740 (+) True G4219
TU6119 other downstream 1526110 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 1855200 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 1857851 18403705 ~ 18403776 (+) True trnag-ucc

Expression Profile