RNA id: TU6014


Basic Information

Item Value
RNA id TU6014
length 1279
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G4467
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 17958512 ~ 17985189 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctaataaagtggccagtgagttgatTTACAAGGTAGTAGCTGTTTCACTACCAGTTATAACGTGTCTTTTGTGTTGCAggaaacaccttctcatttaaaatattttagtaatatttaagttttacattgattgtaaatgaatattaaagtgatccagactatgaaggaacacataaggaatcatgtagtaagttaaaagtgttaaacaaaccaaaatactctgtaaagaagcatttaggtgcccttatctggggagctgttaacttgtggtttctgaggctggaactcttgctcttcctttcctggggtggtcctgatgagtgccagttccatcataacatttttgatggtcttatacgtgactgcacttgaggatactttcaaagctcttgaaatgtttcaaattaactgaccttcatttcttagagtaattctttacttagttaagtagttttttcttctcataatatgtattagaacattactcaaatagagctattcactgtatacctgtaactctacctcttcacaactttacaactgatgctctcaaacaaattaagaggcaagaaattcaagttattaactcttgacgagttcagcacagctgttaactggaagcctgaattccaggtgactctacctcataaagctgactgagaaaatgcagccaagatgtgcaaaactctCTAATTTAATCAAgaagtgctactttgaagaaagtaaaatataaagcatattctggtttgtttaacacttttttgctcACTAaatattccatatgtttttctatatatttttgactggtatttgACTGGTACAtttggttcatactgtctgcaatcaaacaaAAGCCAAAGAAAATGATGATTTGGGTCTGTACAATGTAGTAGAAAGTATGTTtccattaaagtggccagtttggCAGCAGTTTGCTGGTATTTTCAGGAGATTGATGAGAATTACATTCACAGTGAGTGCTGGAAGGctttatgtgtgtttatatgggAAAGATCAAGAGGGCATTTCATGAAATATGAAACCTGTTTTTCAGTTGGCTGAGTAATatttcatccctctctctctctctctctctctctctctctcttttaccacAGGTCAGGATCTTTGTATCTCCTGGGAACAACCTCTTCCCTCTCCATTCTCTCCTTCTTCCGACATCTCCTTATAGACGCTATCCCAATGAGGATGATTATAATCAGAAGGACAGCGCCTCCAATGGCCACCGCAAGAATTACGATCTCTGAGAAAGAGgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649869.1 lncRNA upstream 40715 17890228 ~ 17943162 (+) True LOC111192366
TU5998 lncRNA upstream 62872 17882588 ~ 17921005 (+) False G4456
TU6000 lncRNA upstream 62872 17882588 ~ 17921005 (+) True G4456
TU5992 lncRNA upstream 132434 17847764 ~ 17851443 (+) True G4451
TU5961 lncRNA upstream 470077 17449394 ~ 17513800 (+) True G4420
TU6069 lncRNA downstream 25106 18010295 ~ 18011849 (+) False LOC103039709
TU6085 lncRNA downstream 49322 18034511 ~ 18038744 (+) True G4531
TU6092 lncRNA downstream 56100 18041289 ~ 18422356 (+) False LOC103034503
TU6118 lncRNA downstream 78245 18063434 ~ 18065761 (+) True G4549
TU6135 lncRNA downstream 192419 18177608 ~ 18178083 (+) True G4563
XM_022669057.1 mRNA upstream 110061 17454350 ~ 17873816 (+) False lsamp
XM_022669050.1 mRNA upstream 110061 17454352 ~ 17873816 (+) True lsamp
XM_022671138.1 mRNA upstream 1292118 16689234 ~ 16691759 (+) True LOC111192859
XM_007245963.3 mRNA upstream 1340057 16633323 ~ 16643820 (+) True LOC103044410
XM_022671146.1 mRNA downstream 24989 18010178 ~ 18012103 (+) True LOC103039709
XM_022669104.1 mRNA downstream 32570 18017759 ~ 18022389 (+) True LOC111192370
XM_007233939.3 mRNA downstream 139505 18124694 ~ 18131953 (+) True LOC103030597
XM_022669160.1 mRNA downstream 152835 18138024 ~ 18166677 (+) False sidt2
XM_022669153.1 mRNA downstream 152836 18138025 ~ 18166677 (+) True sidt2
TU5717 other upstream 1360808 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 1361137 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 1438023 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 2821603 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 2937493 15046313 ~ 15046384 (+) True trnae-uuc_1
TU6119 other downstream 86775 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 415865 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 418516 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 774186 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 774186 18759375 ~ 18759858 (+) False G4612

Expression Profile