RNA id: TU6187


Basic Information

Item Value
RNA id TU6187
length 471
lncRNA type intronic
GC content 0.42
exon number 2
gene id G4601
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18778003 ~ 18778514 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAATCTATTCACTACAGGAAAGTGGGCCATGTAAGAACCTGAGCTTTTAATTCACTATTttcatctctctttcactctctttctctctctctcttctctctctctctctctctctcacacacacacacacacacactcctcactgaTCTTTATCTGCCTTTCTTTCCTGATTCTCCCTGAAACACATTTGAAGCTAATTTGTATTCCATCATATACCAACACtcaatacatatttaatcactgtgTATTACTCTccctccccctctttctttaccatttctccctctctccatctctccctCTTTCTTTACCATttctcctctctccatctctcccctctttctttaccatttctccctctctccatctctcccctctttctttaccatttctccctctctccatctctcccctctttctttaccatttctccctctctccatctctcccctctttctttaccatttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6204 lncRNA upstream 19871 18756760 ~ 18758132 (+) True G4611
TU6201 lncRNA upstream 60363 18716961 ~ 18717640 (+) True G4608
TU6094 lncRNA upstream 357048 18411814 ~ 18420955 (+) False LOC103034503
TU6168 lncRNA upstream 449996 18314554 ~ 18328007 (+) True G4591
TU6164 lncRNA upstream 471854 18305358 ~ 18306149 (+) True G4587
TU6213 lncRNA downstream 28010 18806524 ~ 18806901 (+) True G4614
TU6184 lncRNA downstream 61452 18839966 ~ 18875470 (+) True G4600
TU6215 lncRNA downstream 77675 18856189 ~ 18858801 (+) True G4616
TU6217 lncRNA downstream 97596 18876110 ~ 18876899 (+) True G4617
TU6342 lncRNA downstream 111479 18889993 ~ 18890211 (+) True G4719
XM_007233954.3 mRNA upstream 278872 18487006 ~ 18499131 (+) True LOC103035466
XM_015601483.2 mRNA upstream 357033 18407119 ~ 18420970 (+) True LOC103034503
XM_007233951.3 mRNA upstream 377865 18389428 ~ 18400138 (+) True LOC103034176
XM_022669255.1 mRNA upstream 391684 18332339 ~ 18386319 (+) True LOC103036794
XM_015601482.2 mRNA upstream 496974 18274825 ~ 18281029 (+) True LOC103033229
XM_022669322.1 mRNA downstream 127132 18905646 ~ 18929820 (+) True LOC103038796
XM_007231017.3 mRNA downstream 289949 19068463 ~ 19101318 (+) True LOC103030891
XM_007231018.3 mRNA downstream 289953 19068467 ~ 19101318 (+) False LOC103030891
XM_022671405.1 mRNA downstream 1062705 19841219 ~ 19841977 (+) True LOC111192961
XM_007247674.3 mRNA downstream 1742700 20521214 ~ 20536207 (+) True psmd2
TU6209 other upstream 18145 18759375 ~ 18759858 (+) True G4612
TU6210 other upstream 18145 18759375 ~ 18759858 (+) False G4612
TU6211 other upstream 18145 18759375 ~ 18759858 (+) False G4612
trnag-ucc other upstream 374227 18403705 ~ 18403776 (+) True trnag-ucc
trnaw-cca other upstream 376878 18401054 ~ 18401125 (+) True trnaw-cca
TU6404 other downstream 382217 19160731 ~ 19165631 (+) True G4775
TU6659 other downstream 1770703 20549217 ~ 20551609 (+) False LOC107197594
TU6745 other downstream 2205193 20983707 ~ 20999200 (+) True G5026
trnag-ucc_4 other downstream 3810946 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 3811987 22590501 ~ 22590572 (+) True trnag-ucc_5

Expression Profile