RNA id: TU6204


Basic Information

Item Value
RNA id TU6204
length 282
lncRNA type intronic
GC content 0.37
exon number 2
gene id G4611
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18756760 ~ 18758132 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTAATTTGTAACTGTGCTGTTTGTCGGTTGCTTAATTTGTAACTGTGCTGTTTGTCGGTTGGTTGATTTGGATCTGTGCTGTTTGTCGGTTGGTTgatttgtagctgtgctgtttgttgTTCGATTGATGTATAACTGTTCTGTTTGTCACTGTTGATTGCTTGTCTGTGGCTTAATTTGTTACTGTGAGGTTTGTCGGTTGCTTAAATTGTAACTGTGCTGTTTGTCGGTTGCTTAATTTGTAACTGTGCTGTTTGTCAGTTGGTTAATTTGTAACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6201 lncRNA upstream 39120 18716961 ~ 18717640 (+) True G4608
TU6092 lncRNA upstream 334404 18041289 ~ 18422356 (+) False LOC103034503
TU6094 lncRNA upstream 335805 18411814 ~ 18420955 (+) False LOC103034503
TU6168 lncRNA upstream 428753 18314554 ~ 18328007 (+) True G4591
TU6158 lncRNA upstream 450508 18258571 ~ 18306252 (+) False G4582
TU6187 lncRNA downstream 19871 18778003 ~ 18778514 (+) True G4601
TU6213 lncRNA downstream 48392 18806524 ~ 18806901 (+) True G4614
TU6184 lncRNA downstream 81834 18839966 ~ 18875470 (+) True G4600
TU6215 lncRNA downstream 98057 18856189 ~ 18858801 (+) True G4616
TU6217 lncRNA downstream 117978 18876110 ~ 18876899 (+) True G4617
XM_007233954.3 mRNA upstream 257629 18487006 ~ 18499131 (+) True LOC103035466
XM_015601483.2 mRNA upstream 335790 18407119 ~ 18420970 (+) True LOC103034503
XM_007233951.3 mRNA upstream 356622 18389428 ~ 18400138 (+) True LOC103034176
XM_022669255.1 mRNA upstream 370441 18332339 ~ 18386319 (+) True LOC103036794
XM_015601482.2 mRNA upstream 475731 18274825 ~ 18281029 (+) True LOC103033229
XM_022669322.1 mRNA downstream 147514 18905646 ~ 18929820 (+) True LOC103038796
XM_007231017.3 mRNA downstream 310331 19068463 ~ 19101318 (+) True LOC103030891
XM_007231018.3 mRNA downstream 310335 19068467 ~ 19101318 (+) False LOC103030891
XM_022671405.1 mRNA downstream 1083087 19841219 ~ 19841977 (+) True LOC111192961
XM_007247674.3 mRNA downstream 1763082 20521214 ~ 20536207 (+) True psmd2
trnag-ucc other upstream 352984 18403705 ~ 18403776 (+) True trnag-ucc
trnaw-cca other upstream 355635 18401054 ~ 18401125 (+) True trnaw-cca
TU6119 other upstream 683097 18071964 ~ 18073663 (+) True G4550
TU5717 other upstream 2133691 16619046 ~ 16623069 (+) False G4219
TU6209 other downstream 1243 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 1243 18759375 ~ 18759858 (+) False G4612
TU6211 other downstream 1243 18759375 ~ 18759858 (+) False G4612
TU6404 other downstream 402599 19160731 ~ 19165631 (+) True G4775
TU6659 other downstream 1791085 20549217 ~ 20551609 (+) False LOC107197594

Expression Profile