RNA id: TU6215


Basic Information

Item Value
RNA id TU6215
length 2487
lncRNA type intronic
GC content 0.45
exon number 3
gene id G4616
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18856189 ~ 18858801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGACTGTGTATGAGACTATGTGAGACTGTGCAAGACTATATGAGACTCCGAGATGTGTAAGACTGTGTAAGACTGCATGCAAGACTGTGAGACTGTGCGTAAGACTCTGAGACTGTGGGTGAGGCTCTATGAgactgtgtgtaagactgtgtgaGACTGTGCAAGACAGTATGAGACTGTGCGAGACTATATGAGACTGCTTGAGACTGTGAAAGACTGTATGAGACTGTGTGAGACTTTATGAGACTGTGTGGGACTCTATGAGACTTTATGAGACTGTGTAAGACTGCATGAGAGACTGTGTATAAGACTGTGTATGAGACTGCTTAAGACTGTGCAAGACTATATGAGACTGTGCAAGACTGTGTGAAACTATTTGattgtgtgtgagactgtgtgagaCTTTATGAGACTGTGTGAGACTGAGTGTGAGACTCTGTTAGACTGTGTATGAGACTGTGCGAGACTGTATGAGATTGTGTGAGGCTGTGCAAGACATTGTTAGACTGCGTTTGACTACATGTGAGGCTGTATGAGATGCTATGAGACTGTGTGAGGCTCTATGAGACTGTGTGTAAGACTGCGTGAGACTGTTCAAGACAGTATGAGACTGTGCAAGACTATATGAGACTGCTTGAGACTGTGAAAGACTATATGAGACGGTGCAAGACTGTGTGAAACTATTTGattgtgtgtgagactgtgtgagaCTTTATGAGACTTTATGAGACTGTGTGAGACTGCGTGTGAGACTCTGTTAGACTGTGTATGAGACTGTGCGAGACTGTATGAGACTGTGTGAGGCTGTGCACGACTGTGTTAGACTGCGTTTGACCACATGTGAGGCTCTGTGGGACTCTATGAGACTGTGTGAGACAGTGTACTGTATTAACAGTTTGAGATGGCCCAGATAAAGGTAGATGATAGTGTAGATGATGTGGAAACATGTGAAGGTCCATTAAATTACCAGTCAGTTCTCGTAGTCTGTGGTGTTGGATGTGAAGAAATGGGCAGTTTTATGGGGAGTTCAAATTTGAGGCACTCTAAAAAGGGTCAGATCATTAGGACCAGACAACTGGATCATTGGAGCATCTTCCAAATGGCTCAAAGGATTATGGGGGCTCCTGGTCAACAGTGGGAAATACCATGGTGAGCTCTGAATGCTCCAGAGGACCTGCTGCCTTGATCTGAGGCTCATCAGTTTGAATCCTGAgttatgctgcttctccattAGCAGCAGAAGTCCGAGAGAGTACAGTTGGCCATGCTAACTGGGGACTGAGGAGGGATCTGGATTTGCTGAAACATCTTGTTGCCAGTGGTGACAGATATGACAGGGAAGCTTCAGGGGTCTTATAGAGTTCATACCGTGGTGAGTTGGGTCTGTTTTGCTGCAGGAGGAAAGTGGGCGGCTAAACTAAGAATTCTTCCGCTGCTCTGACAGCAGCCCGAACTTCCCACCGTCATCAGATACCTTTTACTCAGCATGTTCGGCGGTTGACCCGTTTGAGATGTATAATGTTGGAAAGCTCCAGTgtgcagagcagcagcagcagcagcagcagcggcatcCATCCGGCAGTGCTTCAGGGTTAATGACTTTAGATCAGTCCGCATGTTTCTGCTCCCAGAACTCCTCACCTCCCGACTCCTGTCCAATTACCAGCCTACTTAACCGAAAGATCCCTCTCTGTCCAGGTGGCTCTTATTTAGAGCTGTGATTTATCGCCGTGAGGGTGAACTGAGATTTGCTAAAAAGAAATACTTCAGCATTTTTTCTTTTCCGCACTCTGCTGCATCCGTCGGGTACAGTGACTTGACATTTACTGTAAAGtagaaaatagatttttttgtgggGGGTGGGGAACTTGTTTGGAGTTTGCTCTCTACTTCAGTTGATTTCAGACACCCTCGTTACCTAAGACTCTTCCCCATAGCAGCATCAAGCAAGGCCGTCCTTCTAAACATGAGGTGACACTCCAGCACAGCATCACTTCTGAGCctcaacatgcttggaggagaacactaactgctaATTCTGTCACATTAGCTACTAGGAAGCCATGCTACCCAACACTTAAAAAAGCTGAGGGAACGGGGGAGAGGGAGATccatcggtaacactttacttggatggtccattttatggccttgttgaatctcaactgacattcaactaacactgaattgaatgtccattaaattgaacttaaccctatgttgaatgtaaatgattcaaaatagaacctaaccgtacacctaaccctaaccttaacccttaatcaaccataaaatcaaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatcaaaccctacacctaaccctaaccttaacccttaatcaaccatacaatctaaccctacacctaactctaaccttaacccttaaatcaaccctaaaatctaaccctacacctaaccttaacccttaatccaccataaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6213 lncRNA upstream 49288 18806524 ~ 18806901 (+) True G4614
TU6187 lncRNA upstream 77675 18778003 ~ 18778514 (+) True G4601
TU6204 lncRNA upstream 98057 18756760 ~ 18758132 (+) True G4611
TU6201 lncRNA upstream 138549 18716961 ~ 18717640 (+) True G4608
TU6094 lncRNA upstream 435234 18411814 ~ 18420955 (+) False LOC103034503
TU6217 lncRNA downstream 17309 18876110 ~ 18876899 (+) True G4617
TU6342 lncRNA downstream 31192 18889993 ~ 18890211 (+) True G4719
TU6340 lncRNA downstream 82426 18941227 ~ 18943398 (+) True G4717
TU6366 lncRNA downstream 131628 18990429 ~ 18990948 (+) True G4742
TU6370 lncRNA downstream 144474 19003275 ~ 19004516 (+) True G4746
XM_007233954.3 mRNA upstream 357058 18487006 ~ 18499131 (+) True LOC103035466
XM_015601483.2 mRNA upstream 435219 18407119 ~ 18420970 (+) True LOC103034503
XM_007233951.3 mRNA upstream 456051 18389428 ~ 18400138 (+) True LOC103034176
XM_022669255.1 mRNA upstream 469870 18332339 ~ 18386319 (+) True LOC103036794
XM_015601482.2 mRNA upstream 575160 18274825 ~ 18281029 (+) True LOC103033229
XM_022669322.1 mRNA downstream 46845 18905646 ~ 18929820 (+) True LOC103038796
XM_007231017.3 mRNA downstream 209662 19068463 ~ 19101318 (+) True LOC103030891
XM_007231018.3 mRNA downstream 209666 19068467 ~ 19101318 (+) False LOC103030891
XM_022671405.1 mRNA downstream 982418 19841219 ~ 19841977 (+) True LOC111192961
XM_007247674.3 mRNA downstream 1662413 20521214 ~ 20536207 (+) True psmd2
TU6209 other upstream 96331 18759375 ~ 18759858 (+) True G4612
TU6210 other upstream 96331 18759375 ~ 18759858 (+) False G4612
TU6211 other upstream 96331 18759375 ~ 18759858 (+) False G4612
trnag-ucc other upstream 452413 18403705 ~ 18403776 (+) True trnag-ucc
trnaw-cca other upstream 455064 18401054 ~ 18401125 (+) True trnaw-cca
TU6404 other downstream 301930 19160731 ~ 19165631 (+) True G4775
TU6659 other downstream 1690416 20549217 ~ 20551609 (+) False LOC107197594
TU6745 other downstream 2124906 20983707 ~ 20999200 (+) True G5026
trnag-ucc_4 other downstream 3730659 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 3731700 22590501 ~ 22590572 (+) True trnag-ucc_5

Expression Profile