RNA id: TU6562


Basic Information

Item Value
RNA id TU6562
length 275
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G4902
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 19785354 ~ 19785628 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccttcttggtgttatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgcgccaacaaaactgtgctcttaccctgctaactgaaccttcacactctgctcttactggtgcaatgtgcaattaatgaagattggccaccaggctgctccaatttagccatgaaacctcccacactaaaatgacaggtg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6548 lncRNA upstream 49714 19733521 ~ 19735640 (+) True G4892
TU6500 lncRNA upstream 136521 19639376 ~ 19648833 (+) True G4853
TU6449 lncRNA upstream 506338 19278771 ~ 19279016 (+) True G4809
TU6389 lncRNA upstream 633307 19104769 ~ 19152047 (+) True G4761
TU6381 lncRNA upstream 683305 19101608 ~ 19102049 (+) True G4753
TU6589 lncRNA downstream 411215 20196843 ~ 20197053 (+) True G4919
TU6600 lncRNA downstream 516234 20301862 ~ 20302429 (+) True G4930
TU6602 lncRNA downstream 519061 20304689 ~ 20304925 (+) True G4932
XR_002650152.1 lncRNA downstream 593616 20379244 ~ 20380295 (+) True LOC111192871
TU6610 lncRNA downstream 599136 20384764 ~ 20385255 (+) True G4940
XM_007231017.3 mRNA upstream 684036 19068463 ~ 19101318 (+) True LOC103030891
XM_007231018.3 mRNA upstream 684036 19068467 ~ 19101318 (+) False LOC103030891
XM_022669322.1 mRNA upstream 855534 18905646 ~ 18929820 (+) True LOC103038796
XM_022669310.1 mRNA upstream 914535 18666879 ~ 18870819 (+) True fat3
XM_007233954.3 mRNA upstream 1286223 18487006 ~ 18499131 (+) True LOC103035466
XM_022671405.1 mRNA downstream 55591 19841219 ~ 19841977 (+) True LOC111192961
XM_007247674.3 mRNA downstream 735586 20521214 ~ 20536207 (+) True psmd2
XM_015605437.2 mRNA downstream 752092 20537720 ~ 20545404 (+) True LOC107197593
XM_007247670.2 mRNA downstream 759912 20545540 ~ 20548431 (+) True LOC103036360
XM_022669425.1 mRNA downstream 769831 20555459 ~ 20557658 (+) True LOC111192413
TU6404 other upstream 619723 19160731 ~ 19165631 (+) True G4775
TU6209 other upstream 1025496 18759375 ~ 18759858 (+) True G4612
TU6210 other upstream 1025496 18759375 ~ 18759858 (+) False G4612
TU6211 other upstream 1025496 18759375 ~ 18759858 (+) False G4612
trnag-ucc other upstream 1381578 18403705 ~ 18403776 (+) True trnag-ucc
TU6659 other downstream 763589 20549217 ~ 20551609 (+) False LOC107197594
TU6745 other downstream 1198079 20983707 ~ 20999200 (+) True G5026
trnag-ucc_4 other downstream 2803832 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 2804873 22590501 ~ 22590572 (+) True trnag-ucc_5
trnag-ucc_6 other downstream 2805791 22591419 ~ 22591490 (+) True trnag-ucc_6

Expression Profile