RNA id: TU6761


Basic Information

Item Value
RNA id TU6761
length 1271
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G5036
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 21087974 ~ 21160121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttaaatgttgactaactaactaaaCATCTAAATTGTTATTTCTAGAAAAAAGGTAGATATTGTTGAAACTTTTAAATTGTTCGTTGTAAttgaaactcattatttgaaagttcttacatctccctcatctgttGACTTGCCatggtatagatccctccctcagacaaagtctgtaCTGTccgaggttctcaaccaaagtgagttttgcataatatatgtcccctttaatgcTAGTTGTAGCTTAAACATAGTAAATGCAGttttcatttaaatgaataCATAGTTTTAACAAGAACATATTTAAGAGTTTTCGGAAGTTTCTAGCATTTAAGAAGTTTTAACAAAAGGTACACAAGTTTTAAAAATCACTTTCACTTATGGTACTTGTTAATGAAACTAAACTGTGGCTCAGTGTGCGAAATGTAACttaaattgattaaattattttttaaattagtttaatgcttaaaatgtaaaatgttggaCTCCTGCCCTAAAAACTggaaatatgcatttttttgtacaccacaatattgtgttttaaCAGAGAAAATACAGTTCAAACCTCTTCTGAataactgatgttttttctgatGTTTACTAATGCTTCCCTTGGTTAAGGGCTGTATGCTATGACATAACAATCAGTATCATTTAGAAATGAATGTCTTAATGATGATGAATGTGATTCTAGACATTGCGTAGTGCATTTGGGTTGACAAGTGatgttaaaagtgtattttgtgTTAACATCGCTGGAATGTTGTTAAGTTCACCACTCTGATTGTGCCACTGGCCTTAATTTGATGCTAATTAAGCATCTGACACGTCTTAAAGGAGCTAAATGGTGGAATTTTGGGTGAATTttggtgcttttttttgtttgtttctttagtttttaggatTGATACCTTTGAATCCAGGATCATGctgcttcagcatcagcagccggagtccgagagagagcacaattgcctTTAACATCACTCCTAGTGTGATGATGGTCATCACAGGCCTTTCTTAGCTGaggagtgcgctgtgatgctacccaGTAATGTTGCagtacatcagcagcagtttgaaaagaggtggagcctgacttcacatgtatgggAGGAGGCATTCGCTAGGGGCCATTACTAACTAGTGATTGGGTgattatatttaaacagggtTTGAGTATATAGGCCCTTCAAAATTccgtggctcttgatacatcacaaagatttgctgtcttggtcacagatgcgccagcaagacgtgcaccaa

Function

GO:

id name namespace
GO:0036344 platelet morphogenesis biological_process
GO:0030220 platelet formation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6750 lncRNA upstream 105226 20982243 ~ 20982748 (+) True G5028
TU6724 lncRNA upstream 204881 20882811 ~ 20883093 (+) True G5012
TU6715 lncRNA upstream 325003 20757175 ~ 20762971 (+) True G5003
TU6703 lncRNA upstream 383474 20703760 ~ 20704500 (+) True G4994
TU6650 lncRNA upstream 518754 20565778 ~ 20569220 (+) True LOC103037169
XR_002649931.1 lncRNA downstream 101614 21261735 ~ 21269163 (+) True LOC103030556
XR_002649934.1 lncRNA downstream 101614 21261735 ~ 21269163 (+) False LOC103030556
XR_002649930.1 lncRNA downstream 103358 21263479 ~ 21268337 (+) False LOC103030556
XR_002649933.1 lncRNA downstream 103358 21263479 ~ 21268337 (+) False LOC103030556
XR_002649935.1 lncRNA downstream 103358 21263479 ~ 21268337 (+) False LOC103030556
XM_022669545.1 mRNA upstream 1238 21008121 ~ 21086736 (+) True LOC103030875
XM_022669491.1 mRNA upstream 346981 20732285 ~ 20740993 (+) False LOC103033175
XM_022669488.1 mRNA upstream 346981 20732286 ~ 20740993 (+) True LOC103033175
XM_022669487.1 mRNA upstream 363400 20700702 ~ 20724574 (+) True fam131a
XM_007247686.3 mRNA downstream 29620 21189741 ~ 21245822 (+) True LOC103042479
XM_022669568.1 mRNA downstream 88732 21248853 ~ 21261198 (+) True LOC103042160
XM_022669575.1 mRNA downstream 88732 21248853 ~ 21261198 (+) False LOC103042160
XM_007247646.3 mRNA downstream 664806 21824927 ~ 21890977 (+) True clpb
XM_015605447.2 mRNA downstream 664806 21824927 ~ 21890977 (+) False clpb
TU6745 other upstream 88774 20983707 ~ 20999200 (+) True G5026
TU6659 other upstream 536365 20549217 ~ 20551609 (+) False LOC107197594
TU6404 other upstream 1922343 19160731 ~ 19165631 (+) True G4775
TU6209 other upstream 2328116 18759375 ~ 18759858 (+) True G4612
trnag-ucc_4 other downstream 1429339 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 1430380 22590501 ~ 22590572 (+) True trnag-ucc_5
trnag-ucc_6 other downstream 1431298 22591419 ~ 22591490 (+) True trnag-ucc_6
XR_002649972.1 other downstream 1482489 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other downstream 1482489 22642610 ~ 22664836 (+) False LOC103041654

Expression Profile