RNA id: XR_002649930.1


Basic Information

Item Value
RNA id XR_002649930.1
length 2040
lncRNA type inter_gene
GC content 0.36
exon number 6
gene id LOC103030556
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 21261735 ~ 21269163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgttgtctgctggagtcccaaagctttataaataactgtaaccatttccagactgatagatgatcaatgactttgttctCTCATCTGTTTTGAATTTCATtgtggcataatgtgttgctttttgagatattgtatcttcatgttgtcagacaggttctattttaggGATTTCCtcattctacaggtctggtgtAATTAGTGGTGTAACTAGTGTAAGCTGGTTGTGGCTAGAAGTGAAATTAAATTCATCTTTCCAAAAAATGtagttaatcagagttaattcattaaattaacatttaaaaactgctttttatatttactcaggttcactttgtctgatattaaagtaaGTTTGATGctctgatttaaaaaagtgaaaagaaaagaagtctGTAGATGGTAAATACTTCACAAATGTGCTACTCACTAGGTACAACACTGTAGTGTTTGGCGCAGTGGATGGGTATTCCAGGAAAGTAAGTATTTATTTCATGCTGCTTTTCCATCACTtctcataaaaagtaaaaaataccaCAACTTATACACACAAACTCTACAGTATCTTCTTTTACTTAACTGATGGTTCACATGTGGATGGATGAAAGGACTAGAGGCAGACCTCACCACCAAGAAAGAGACAAATGCAAGGTTTCTTTCTCCTCAGCTCtgaGTATTCCCAAAGCAGCCACCTCCCCACCAGTGAACTGATGGCCTTCTATTACCTCAAGAGTCCTCCAGTAATAAACGAAAGTTTAGGTGATGTGCCTCAGCGGTGATATCAACTACTTTGGACTGACTGCATTTGCTGCCTGCGAAGAAGCAACAGAAAGGCATAGCATACcatcaagGATTGAACGCTTGTGGCGTGAAGTCGAAAACCTGCTTGACCTCAGAGTACAACAACATGCTTCAGGGCCTGGAGACAGATCAGCTTCTTCAGAAGACCTTTTATCTGTCCATGCTGTTTCTCCCAACCTGAAGAAAGACCTTAGAGAGTTTAGATGTCAGTTCAGAACAATCATCTAATTGGAACAACACGACTCCTGAGCAGTTCTGGTAGTTGGGAATGAGAGAAACCAGGCATAACATGCTGAGGATACTGACTGGGACATTACCACCAACCATGATGGAGAGATTGTGGTTCTCAAACTGAGCTGCACTTGAGGGAAGAACACatacaagtggatcagacactgcAGCGCTGGACCTGTAATTAACACACTGTGCatatttttctcaatgggtGATAGTTTCTGCATTTTAAAAAGACAGATTCGCATTTATCAAATTGTTATTTTGTATGTTAgttgtagggctgcaacaaccaaataatttaatttaataatcagataaaaaaggagggaaaaaaaaaactgtctttaGTCAAACTAATGTTGTAACTGTATAAGGAACAAACAAGctaccattatttaaaaaaaaatttacatgACCTGTCAACAGTtaaattaatcataatttaataaGTGATAATCACAGACAAGTTTTTATTTACATCCCATACAAACACTTCCACGCAACATTAGAGTAGAAAAGACCTTGGAAAAGTCTGTAACAGAAAACTTGCTCAAGATAACCTTAATAGACATGAGACACaccttgtttaactactctagcagcaTCTAGTAACAGTaagtgagataaaaaaaaaaaatcttatcactaACATTAGCTTAACTACAGCTTGTTTTGGAACTGCTGGTGAAGCTGCAaccttttaaggtggaagggaaaaaCTCTGGGAGGAAAATGCTAAATGTGTAAATTAATTACTCAAGCAGATTTAGTAGTTGAGTGAGATATATAGACAATAGAATTAACTCACTACAAACTATTGGTGAATCTTCACCCGTGGATCCATTATGCATTCAGCTTAAAAGTCCTTTACTAATGTAAACTGTACTCATGTGTATAATAAATGTAGTCTCAACTAATTGATTagttgttgcagccctagtttgttgtgaatacttttacttttgtactGAACTGTAAAATAAAGACAGCTTTGtatttatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6761 lncRNA upstream 103358 21087974 ~ 21160121 (+) True G5036
TU6750 lncRNA upstream 280731 20982243 ~ 20982748 (+) True G5028
TU6724 lncRNA upstream 380386 20882811 ~ 20883093 (+) True G5012
TU6715 lncRNA upstream 500508 20757175 ~ 20762971 (+) True G5003
TU6703 lncRNA upstream 558979 20703760 ~ 20704500 (+) True G4994
TU6797 lncRNA downstream 386700 21655037 ~ 21658746 (+) True G5069
TU6795 lncRNA downstream 394153 21662490 ~ 21669652 (+) True G5067
TU7110 lncRNA downstream 648245 21916582 ~ 21920497 (+) True G5329
TU7112 lncRNA downstream 654783 21923120 ~ 21924879 (+) True G5331
TU7114 lncRNA downstream 664352 21932689 ~ 21939206 (+) True G5333
XM_022669568.1 mRNA upstream 2281 21248853 ~ 21261198 (+) True LOC103042160
XM_022669575.1 mRNA upstream 2281 21248853 ~ 21261198 (+) False LOC103042160
XM_007247686.3 mRNA upstream 17657 21189741 ~ 21245822 (+) True LOC103042479
XM_022669545.1 mRNA upstream 176743 21008121 ~ 21086736 (+) True LOC103030875
XM_022669488.1 mRNA upstream 522486 20732286 ~ 20740993 (+) True LOC103033175
XM_007247646.3 mRNA downstream 556590 21824927 ~ 21890977 (+) True clpb
XM_015605447.2 mRNA downstream 556590 21824927 ~ 21890977 (+) False clpb
XM_007247645.3 mRNA downstream 639936 21908273 ~ 21913768 (+) True phox2a
XM_022669701.1 mRNA downstream 764242 22032579 ~ 22037644 (+) True LOC103025167
XM_015605424.2 mRNA downstream 776385 22044722 ~ 22050555 (+) True LOC103025996
TU6745 other upstream 264279 20983707 ~ 20999200 (+) True G5026
TU6659 other upstream 711870 20549217 ~ 20551609 (+) False LOC107197594
TU6404 other upstream 2097848 19160731 ~ 19165631 (+) True G4775
TU6210 other upstream 2503621 18759375 ~ 18759858 (+) False G4612
trnag-ucc_4 other downstream 1321123 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 1322164 22590501 ~ 22590572 (+) True trnag-ucc_5
trnag-ucc_6 other downstream 1323082 22591419 ~ 22591490 (+) True trnag-ucc_6
XR_002649972.1 other downstream 1374273 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other downstream 1374273 22642610 ~ 22664836 (+) False LOC103041654

Expression Profile