RNA id: XM_022669755.1


Basic Information

Item Value
RNA id XM_022669755.1
length 2959
RNA type mRNA
GC content 0.55
exon number 16
gene id LOC103043812
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22407556 ~ 22524746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGCGGCGCACTGTCTGCAGCATGTCttagtgtctctctctcgctcgcgcTGAGTGgatctttctctatctctctacctctctctctgtgtgagagagtgtgagtgcgttttcttttattttgttcctctctcgctctccgcGTGTCTCGCGCTGCTCCATGCCTCCTCgcgcagtgagtgtgtgtgagtgactgtgtgtgtgagtgtgtgtgagtttgagcTGCGATGCGGATCGTCGTGTTGCCGCTGCTGTGGGGGCTCGCGGAGGGGGCTTTCCCCAGCAGCGTCCAGATAGGTGGGCTGTTCATCAGAAACACTGATCAGGAGTACACAGCTTTCCGATTGGCCATATTTCTGCACAACACCAGCCCCAACGCCACAGAGGCACCTTTTAACCTTGTTCCGCACGTGGACAACATCGAGACCGCCAACAGCTTTGCCGTCACCAACGCCTTCTGTTCGCAGTACTCGCGGGGTGTGTTTGCGATCTTTGGGCTGTATGATAAGCGCTCAGTACACACCCTCACCTCCTTCTGCAGTGCTCTGCACATCTCCCTCATCTCCCCCAGTTTCCCTGCCGAGGGGGAGACGCAGTTCGTCCTGCAGCTGCGGCCCAACCTGCGGGGGGCGCTCATCAGCATCCTCGACCACTATGACTGGAACCGCTTCGTCTTCATTTACGACACAGACAGAGgatatGCCATCCTGCAGGCCATCATGGAGAAGGCGGGTCAGAACGGCTGGCAGGTGAGCGCCATCTGTGTGGAGAACTTCAACGATGCTGGCTACCGGCGCCTCCTAGAAGACCTGGACCGCAGGCAGGAGAAAAAGTTTGTCATTGATCTGGAGGCAGAACGACTGCAGACTATACTAGAACAGGCGGTGAGTGTAGGGAAGCATGTAAAGGGATATCATTACATCATCGCCAACCTGggtttTAAGGATATATCTCTGGAGAGGTTTATGCACGGTGGGGCGAATGTCACAGGTTTCCAGCTGGTGGACTTCAGTAAGCCGATGGTCATCAAACTGATGCAGCGCTGGAACAAACTGGACCAGAGGGAGTACCCTGGCTCAGAGAGCCCGCCCAAGTTCTCATCCTCGTTGACGTATGACGCCGTGCTGGTGATGGCCGAGGCTTTCCGCAACCTTCGGCGGCAGAAGATTGACATCTCTCGCAGAGGAAATGCTGGAGACTGCCTGGCCAATCCGGCGGCTCCTTGGAACCAGGGCATCGACATGGAACGCACCTTAAAACAGgtgcggATTCAGGGTCTGACGGGGAATATTCAGTTTGATCATTACGGACGCAGAGTAAACTACACCATGGACGTATTTGAACTAAGAAGCAACGGACCTCAAAAAATTGGCTACTGGAATGATATTGATAAGCTGGTGCTGGTGCAGAATGAGTTGGGTGCAGGAAATGGATCAGCCATGGAGAACAGAACCGTCATCGTCACCACCATCATGgagGGACCGTACGTAATGCTGAAGAAGAACTGGGAGATGTATGAAGGGAACGACCAGTATGAGGGATACTGTGTGGATCTGGCGTCAGAAATTGCCAAACACATTGGAATTAAATACAAGATATCCATCGTTCCTGACGGGAAGTACGGAGCAAGGGATCCAGAGACTAAAATCTGGAACGGGATGGTTGGGGAGCTGGTGTACGGGAAAGCGGAGATCGCGGTGGCCCCTTTAACCATAACGCTGGTCCGGGAGGAGGTCATAGACTTCTCAAAACCATTCATGAGTCTGGGCATCTCCATAATGATAAAGAAGCCCCAAAAGTCCAAGCCTGGTGTGTTCTCCTTCCTGGACCCGCTGGCCTACGAGATCTGGATGTGCATCGTGTTCGCCTACATAGGCGTGAGCGTGGTGCTCTTCCTGGTCAGCCGCTTCAGCCCGTACGAGTGGCACACGGAGGAGCCCGAGGAGGGCTCGGAATCTGCTCCGGCCGACCAGCCCCCCAACGAGTTCGGAATATTCAACAGTCTCTGGTTCTCTCTGGGAGCGTTCATGCAGCAGGGCTGTGACTTCACACCAAGgTCTCTCTCAGGTCGTATAGTAGGAGGTGTCTGGTGGTTCTTCACTCTGATCATCATCTCCTCCTACACAGCTAACCTGGCAGCGTTCCTCACAGTGGAGCGGATGGTGTCTCCGATCGAGAGTGCCGAGGATCTGGCCAAGCAGACGGAGATAGCGTACGGAACGCTGGACGCCGGATCCACCAAAGAGTTCTTCAGGAGGTCGAAGATTGCGGTGTACGAGAAAATGTGGTCGTACATGAAGTCGGCTGAGCCGAGCGTGTTCACGAAGACGACGGCAGAGGGTGTGGCACGTGTGCGGAAGTCAAAGGGGAAGTACGCCTTCCTCCTGGAGTCCACCATGAATGAGTACACAGAACAGAGGAAGCCCTGCGACACCATGAAAGTCGGGGGGAACCTGGACTCCAAGGGATATGGAATTGCCACGCCCAAAGGCTCGCAGTTAAGAACCCCGGTAAACCTTGCAGTTTTGAAACTGAGTGAAGCAGGAGTCTTAGACAAACTGAAAAACAAGTGGTGGTACGATAAAGGGGAATGTGGACCCAAGGACTCGGGAAGTAAGGATAAGAGTTCGCAGGCGCTCAGCTTGAGCAACGTGGCGGGGGTCTTCTACATCCTGGTGGGCGGCCTGGGGCTGGCCATGCTGGTGGCACTGGTGGAGTTCTGCTATAAGTCGCGGGCGGAGGCGAAGAGAATGCAGGTGGAGGCGGCAGAACTGAATTTTAGCCCTGCCCCGAGCCCGAGCGCGCAGAACTTAGCCACTTATAGAGAGGGGTACAACGTGTACGGCTCTGATGGCATAAAGATTTAGGGCTCACCTTCAGCGAAGCCATGAGAAACAAGGCCCGGTTGTCCATCACAGGCAGCCTGGGGGAAAATGGGCGTGTCCTGACACCAGACTGC

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0030425 dendrite cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7321 lncRNA upstream 61774 22344076 ~ 22345782 (+) True G5455
TU7267 lncRNA upstream 192505 22214411 ~ 22215051 (+) True G5416
TU7212 lncRNA upstream 210071 22169112 ~ 22197485 (+) True G5379
TU7215 lncRNA upstream 213673 22192933 ~ 22193883 (+) True G5382
TU7202 lncRNA upstream 279145 22126998 ~ 22128411 (+) False G5371
TU7339 lncRNA downstream 26011 22521606 ~ 22524746 (+) False LOC103043812
TU7548 lncRNA downstream 211518 22707113 ~ 22707769 (+) True G5595
TU7581 lncRNA downstream 327276 22822871 ~ 22824066 (+) True G5619
TU7587 lncRNA downstream 407171 22902766 ~ 22918073 (+) True G5620
TU7592 lncRNA downstream 407171 22902766 ~ 22917835 (+) False G5620
XM_022671458.1 mRNA upstream 78363 22258158 ~ 22329193 (+) True dync2h1
XM_022671450.1 mRNA upstream 217248 22165399 ~ 22190308 (+) True LOC103022049
XM_022669731.1 mRNA upstream 245361 22138587 ~ 22162195 (+) True il1rap
XM_022669732.1 mRNA upstream 249175 22138595 ~ 22158381 (+) False il1rap
XM_007247630.3 mRNA upstream 306010 22083937 ~ 22101546 (+) False LOC103022859
XM_007248585.3 mRNA downstream 11272 22506867 ~ 22515457 (+) False aasdhppt
XM_007248587.3 mRNA downstream 11291 22506886 ~ 22515457 (+) False aasdhppt
XM_007248586.3 mRNA downstream 11316 22506911 ~ 22515457 (+) True aasdhppt
XM_007243028.3 mRNA downstream 91595 22587190 ~ 22594557 (+) True LOC103031483
XM_007248584.3 mRNA downstream 99406 22595001 ~ 22604561 (+) True lamtor1
TU6745 other upstream 1408356 20983707 ~ 20999200 (+) True G5026
TU6659 other upstream 1855947 20549217 ~ 20551609 (+) False LOC107197594
TU6404 other upstream 3241925 19160731 ~ 19165631 (+) True G4775
TU6210 other upstream 3647698 18759375 ~ 18759858 (+) False G4612
trnag-ucc_4 other downstream 93865 22589460 ~ 22589531 (+) True trnag-ucc_4
trnag-ucc_5 other downstream 94906 22590501 ~ 22590572 (+) True trnag-ucc_5
trnag-ucc_6 other downstream 95824 22591419 ~ 22591490 (+) True trnag-ucc_6
XR_002649972.1 other downstream 147015 22642610 ~ 22673984 (+) False LOC103041654
XR_002649973.1 other downstream 147015 22642610 ~ 22664836 (+) False LOC103041654

Expression Profile